RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 NUP210Q8TEM1 1887 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-211ENST00000552338 CLEC4CQ8WTT0 213 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 ZNF707Q96C28 371 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-211ENST00000552338 ZNF512Q96ME7 567 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-211ENST00000552338 SLITRK1Q96PX8 696 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 CDK5RAP1Q96SZ6 601 aaKnown RBP10.03□□□□□ -0.8
LIMA1-211ENST00000552338 CNPY3Q9BT09 278 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 SFXN1Q9H9B4 322 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 OLA1Q9NTK5 396 aaKnown RBP10.03□□□□□ -0.8
LIMA1-211ENST00000552338 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.03□□□□□ -0.8
LIMA1-211ENST00000552338 IP6K2Q9UHH9 426 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 TFR2Q9UP52 801 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 LAMA2P24043 3122 aaKnown RBP10.03□□□□□ -0.8
LIMA1-211ENST00000552338 DOCK8Q8NF50 2099 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 ZNF840PA6NDX5 716 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 PER2O15055 1255 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 XYLBO75191 536 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 TADA3O75528 432 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 PROSCO94903 275 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 F9P00740 461 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 OAS1P00973 400 aaKnown RBP10.02□□□□□ -0.81
LIMA1-211ENST00000552338 PTPN2P17706 415 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 GPD1P21695 349 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 DDX6P26196 483 aaKnown RBP eCLIP10.02□□□□□ -0.81
LIMA1-211ENST00000552338 CDC25CP30307 473 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 YWHAGP61981 247 aaKnown RBP eCLIP10.02□□□□□ -0.81
LIMA1-211ENST00000552338 OGDHQ02218 1023 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 MTMR3Q13615 1198 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 TAF5Q15542 800 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 CCDC14Q49A88 953 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 TCEAL5Q5H9L2 206 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 PRSS36Q5K4E3 855 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 LRRC38Q5VT99 294 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 SDHAF4Q5VUM1 108 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 LLGL2Q6P1M3 1020 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 DCUN1D2Q6PH85 259 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 HFE2Q6ZVN8 426 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 GAREM2Q75VX8 874 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 SYCE1Q8N0S2 351 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 DEFB106AQ8N104 65 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 ELMOD1Q8N336 334 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 KIAA1958Q8N8K9 716 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 RXFP2Q8WXD0 754 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 CD101Q93033 1021 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 FBXO32Q969P5 355 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 PRDM12Q9H4Q4 367 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 NMUR1Q9HB89 426 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 METTL5Q9NRN9 209 aaKnown RBP10.02□□□□□ -0.81
LIMA1-211ENST00000552338 OSER1Q9NX31 292 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.02□□□□□ -0.81
LIMA1-211ENST00000552338 CTTNBP2NLQ9P2B4 639 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 DNMT3BQ9UBC3 853 aaKnown RBP10.02□□□□□ -0.81
LIMA1-211ENST00000552338 TRIM10Q9UDY6 481 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 GUCA1BQ9UMX6 200 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 ALG6Q9Y672 507 aa10.02□□□□□ -0.81
LIMA1-211ENST00000552338 DOCK4Q8N1I0 1966 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 TRANK1O15050 2925 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 CCDC195A0A1B0GUA6 201 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 GRID2IPA4D2P6 1211 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 KIF2AO00139 706 aaPredicted RBP10.01□□□□□ -0.81
LIMA1-211ENST00000552338 ATMINO43313 823 aaPredicted RBP10.01□□□□□ -0.81
LIMA1-211ENST00000552338 BUB1BO60566 1050 aaPredicted RBP10.01□□□□□ -0.81
LIMA1-211ENST00000552338 MOSPD3O75425 235 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 SPATA31D3P0C874 917 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 SRGAP2BP0DMP2 458 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 RALAP11233 206 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 TCF3P15923 654 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 PDGFRAP16234 1089 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 PGFP49763 221 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 AIF1P55008 147 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 ITIH3Q06033 890 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 RING1Q06587 406 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 MTA1Q13330 715 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 OTUD1Q5VV17 481 aaPredicted RBP10.01□□□□□ -0.81
LIMA1-211ENST00000552338 SYPL2Q5VXT5 272 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 ANKRD54Q6NXT1 300 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 SYCE2Q6PIF2 218 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 SPATA31D4Q6ZUB0 917 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 POLNQ7Z5Q5 900 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 GPR149Q86SP6 731 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 TADA2BQ86TJ2 420 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 NT5DC3Q86UY8 548 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 VSIG1Q86XK7 387 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 PSTKQ8IV42 348 aaKnown RBP10.01□□□□□ -0.81
LIMA1-211ENST00000552338 MICALL1Q8N3F8 863 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 ARFGAP1Q8N6T3 406 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 GIPC2Q8TF65 315 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 NDRG1Q92597 394 aaKnown RBP10.01□□□□□ -0.81
LIMA1-211ENST00000552338 GOLGA1Q92805 767 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 PABPC5Q96DU9 382 aaKnown RBP10.01□□□□□ -0.81
LIMA1-211ENST00000552338 SLC39A13Q96H72 371 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 LRCH3Q96II8 777 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 MCEEQ96PE7 176 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 TRIM7Q9C029 511 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 S1PR5Q9H228 398 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 SMOC2Q9H3U7 446 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 ZNF334Q9HCZ1 680 aaPredicted RBP10.01□□□□□ -0.81
LIMA1-211ENST00000552338 WDR6Q9NNW5 1121 aaKnown RBP10.01□□□□□ -0.81
LIMA1-211ENST00000552338 LZTFL1Q9NQ48 299 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 TRMT1Q9NXH9 659 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms