RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 SETXQ7Z333 2677 aaKnown RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 GCN1Q92616 2671 aaKnown RBP8.1□□□□□ -1.11
NEK3-201ENST00000550331 ASCC3Q8N3C0 2202 aaKnown RBP8.1□□□□□ -1.11
NEK3-201ENST00000550331 THADAQ6YHU6 1953 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 PVALEFA0A1B0GWK0 134 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 A8MXQ7 604 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 K7EQS6 105 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 CST3P01034 146 aaPredicted RBP8.1□□□□□ -1.11
NEK3-201ENST00000550331 CYP17A1P05093 508 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 PTPN1P18031 435 aaKnown RBP8.1□□□□□ -1.11
NEK3-201ENST00000550331 CYP2J2P51589 502 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 DGKEP52429 567 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 AP3M2P53677 418 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 PTSQ03393 145 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 RING1Q06587 406 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 TAF10Q12962 218 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 TRPC3Q13507 836 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 CRY1Q16526 586 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 USP39Q53GS9 565 aaKnown RBP8.1□□□□□ -1.11
NEK3-201ENST00000550331 FILIP1Q7Z7B0 1213 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 DDX42Q86XP3 938 aaKnown RBP eCLIP8.1□□□□□ -1.11
NEK3-201ENST00000550331 NELFCDQ8IXH7 590 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 ADGRG2Q8IZP9 1017 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 NUP93Q8N1F7 819 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 PDZD8Q8NEN9 1154 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 OR6B3Q8NGW1 331 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 GOLGA5Q8TBA6 731 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 TMEM174Q8WUU8 243 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 DUSP9Q99956 384 aaKnown RBP8.1□□□□□ -1.11
NEK3-201ENST00000550331 ZNF518BQ9C0D4 1074 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 RNF38Q9H0F5 515 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 GZF1Q9H116 711 aaPredicted RBP8.1□□□□□ -1.11
NEK3-201ENST00000550331 DPEP3Q9H4B8 488 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 ENAMQ9NRM1 1142 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 SMPD4Q9NXE4 827 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 TBC1D14Q9P2M4 693 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 TFIP11Q9UBB9 837 aaKnown RBP8.1□□□□□ -1.11
NEK3-201ENST00000550331 MMP17Q9ULZ9 603 aa8.1□□□□□ -1.11
NEK3-201ENST00000550331 ABCA7Q8IZY2 2146 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 ADAMTS20P59510 1910 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 ATP8B3O60423 1300 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 SCN1AP35498 2009 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 NBEAQ8NFP9 2946 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 A0A0A0MRY4 1105 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 E2F8A0AVK6 867 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 BCLAF3A2AJT9 711 aaKnown RBP8.09□□□□□ -1.11
NEK3-201ENST00000550331 C4orf47A7E2U8 309 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.09□□□□□ -1.11
NEK3-201ENST00000550331 DCLK1O15075 740 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 CLIC2O15247 247 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 POLR2DO15514 142 aaKnown RBP8.09□□□□□ -1.11
NEK3-201ENST00000550331 EXOC3O60645 756 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 ALDH1A2O94788 518 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 RTN3O95197 1032 aaPredicted RBP8.09□□□□□ -1.11
NEK3-201ENST00000550331 CAVIN2O95810 425 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 TOP3BO95985 862 aaKnown RBP8.09□□□□□ -1.11
NEK3-201ENST00000550331 ABL1P00519 1130 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 MBL2P11226 248 aaPredicted RBP8.09□□□□□ -1.11
NEK3-201ENST00000550331 YWHAQP27348 245 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 GBP1P32455 592 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 TUBP50607 506 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 CACNA2D1P54289 1103 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 MYL6P60660 151 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 CLDN10P78369 228 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 CREB5Q02930 508 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 DHCR24Q15392 516 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 KNOP1Q1ED39 458 aaKnown RBP8.09□□□□□ -1.11
NEK3-201ENST00000550331 C2orf27AQ580R0 203 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 SH3PXD2AQ5TCZ1 1133 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 SNX30Q5VWJ9 437 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 DAB2IPQ5VWQ8 1189 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 PMS2CLQ68D20 193 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 LYPD4Q6UWN0 246 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 MDGA1Q8NFP4 955 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 GATA6Q92908 595 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 COL26A1Q96A83 441 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 OTUB2Q96DC9 234 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 TNIP3Q96KP6 325 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 PNKPQ96T60 521 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 SCNM1Q9BWG6 230 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 B3GNT5Q9BYG0 378 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 ZFAND3Q9H8U3 227 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 TMEM30AQ9NV96 361 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 COMMD8Q9NX08 183 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 FAM13BQ9NYF5 915 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 CFAP97Q9P2B7 532 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 WASF3Q9UPY6 502 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 LAMA5O15230 3695 aa8.09□□□□□ -1.11
NEK3-201ENST00000550331 SMG1Q96Q15 3661 aaKnown RBP8.09□□□□□ -1.11
NEK3-201ENST00000550331 DMXL2Q8TDJ6 3036 aa8.08□□□□□ -1.12
NEK3-201ENST00000550331 PCNX2A6NKB5 2137 aa8.08□□□□□ -1.12
NEK3-201ENST00000550331 LNP1A1A4G5 178 aa8.08□□□□□ -1.12
NEK3-201ENST00000550331 FAM92AA1XBS5 289 aa8.08□□□□□ -1.12
NEK3-201ENST00000550331 PHACTR2O75167 634 aa8.08□□□□□ -1.12
NEK3-201ENST00000550331 KAT7O95251 611 aa8.08□□□□□ -1.12
NEK3-201ENST00000550331 APODP05090 189 aa8.08□□□□□ -1.12
NEK3-201ENST00000550331 GRIA2P42262 883 aa8.08□□□□□ -1.12
NEK3-201ENST00000550331 SEC13P55735 322 aa8.08□□□□□ -1.12
NEK3-201ENST00000550331 NCOA4Q13772 614 aa8.08□□□□□ -1.12
NEK3-201ENST00000550331 ZNF699Q32M78 642 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms