RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 LRP3O75074 770 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 CD44P16070 742 aaKnown RBP17.2■□□□□ 0.34
VPS29-207ENST00000549970 TIE1P35590 1138 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 DGKEP52429 567 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 MRPS21P82921 87 aaKnown RBP17.2■□□□□ 0.34
VPS29-207ENST00000549970 GOLGA8FQ08AF8 430 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 GOLGA8DPQ0D2H9 430 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 CUL2Q13617 745 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 C10orf120Q5SQS8 335 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 BTBD8Q5XKL5 378 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 TMEM25Q86YD3 366 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 ALLCQ8N6M5 410 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 SLC35C1Q96A29 364 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 DHTKD1Q96HY7 919 aaPredicted RBP17.2■□□□□ 0.34
VPS29-207ENST00000549970 ZDHHC4Q9NPG8 344 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 SPHK2Q9NRA0 654 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.2■□□□□ 0.34
VPS29-207ENST00000549970 EBF1Q9UH73 591 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 DNMT3LQ9UJW3 386 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 LSM7Q9UK45 103 aaKnown RBP17.2■□□□□ 0.34
VPS29-207ENST00000549970 MMP17Q9ULZ9 603 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 COQ4Q9Y3A0 265 aa17.2■□□□□ 0.34
VPS29-207ENST00000549970 HOXC11O43248 304 aaPredicted RBP17.19■□□□□ 0.34
VPS29-207ENST00000549970 GADD45BO75293 160 aaPredicted RBP17.19■□□□□ 0.34
VPS29-207ENST00000549970 GRIA2P42262 883 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 LRMPQ12912 555 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 CCDC6Q16204 474 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 CSRP2Q16527 193 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 CCDC40Q4G0X9 1142 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 EMC10Q5UCC4 262 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 ARHGAP17Q68EM7 881 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 ANO7Q6IWH7 933 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 PRR23CQ6ZRP0 262 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 HTR3DQ70Z44 454 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 CCDC186Q7Z3E2 898 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 SCD5Q86SK9 330 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 TTC30AQ86WT1 665 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 ETFBKMTQ8IXQ9 262 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 ELOA2Q8IYF1 753 aaPredicted RBP17.19■□□□□ 0.34
VPS29-207ENST00000549970 TXNDC5Q8NBS9 432 aaKnown RBP17.19■□□□□ 0.34
VPS29-207ENST00000549970 DUSP9Q99956 384 aaKnown RBP17.19■□□□□ 0.34
VPS29-207ENST00000549970 TPSD1Q9BZJ3 242 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 ARRDC1-AS1Q9H2J1 176 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 METTL14Q9HCE5 456 aaKnown RBP17.19■□□□□ 0.34
VPS29-207ENST00000549970 USP3Q9Y6I4 520 aa17.19■□□□□ 0.34
VPS29-207ENST00000549970 MYO18AQ92614 2054 aaKnown RBP17.18■□□□□ 0.34
VPS29-207ENST00000549970 TBC1D3BA6NDS4 549 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 BIN1O00499 593 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 DCLK1O15075 740 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 GREM1O60565 184 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 TULP3O75386 442 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 KLF8O95600 359 aaPredicted RBP17.18■□□□□ 0.34
VPS29-207ENST00000549970 RALAP11233 206 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 SDHBP21912 280 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 PPP1R2P41236 205 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 PSEN1P49768 467 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 ATXN1P54253 815 aaKnown RBP17.18■□□□□ 0.34
VPS29-207ENST00000549970 CRY1Q16526 586 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 GOLGA7BQ2TAP0 167 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 KLHDC10Q6PID8 442 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 TPGS1Q6ZTW0 290 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 TADA2BQ86TJ2 420 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 PIGZQ86VD9 579 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 MIB1Q86YT6 1006 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 PHTF2Q8N3S3 785 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 IL17RCQ8NAC3 791 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 NELFBQ8WX92 580 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 CEP63Q96MT8 703 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 FAM124BQ9H5Z6 455 aaPredicted RBP17.18■□□□□ 0.34
VPS29-207ENST00000549970 DEC1Q9P2X7 70 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 CTNND2Q9UQB3 1225 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 INVSQ9Y283 1065 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 CACNA1AO00555 2505 aa17.18■□□□□ 0.34
VPS29-207ENST00000549970 A0A0A0MRY4 1105 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.17■□□□□ 0.34
VPS29-207ENST00000549970 NEDD8-MDP1E9PL57 170 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 SGK1O00141 431 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 TRIM24O15164 1050 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 EPN2O95208 641 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 CHRM1P11229 460 aaPredicted RBP17.17■□□□□ 0.34
VPS29-207ENST00000549970 HNRNPLP14866 589 aaKnown RBP eCLIP17.17■□□□□ 0.34
VPS29-207ENST00000549970 CD19P15391 556 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 BMP6P22004 513 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 TNFRSF4P43489 277 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 KIR2DL1P43626 348 aaPredicted RBP17.17■□□□□ 0.34
VPS29-207ENST00000549970 PLA2G4AP47712 749 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 FMO5P49326 533 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 SLC8A3P57103 927 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 YWHAEP62258 255 aaKnown RBP17.17■□□□□ 0.34
VPS29-207ENST00000549970 PLK5Q496M5 336 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 SGO2Q562F6 1265 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 TTI2Q6NXR4 508 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 TMEM92Q6UXU6 159 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 ANKRD52Q8NB46 1076 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 MDGA1Q8NFP4 955 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 LOXL4Q96JB6 756 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 BBS2Q9BXC9 721 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 CLIC5Q9NZA1 410 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 RASAL2Q9UJF2 1139 aa17.17■□□□□ 0.34
VPS29-207ENST00000549970 TSPAN16Q9UKR8 245 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms