RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 PPP2R5CQ13362 524 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 HDAC1Q13547 482 aaPredicted RBP4.45□□□□□ -1.7
SNHG1-220ENST00000544550 SLBPQ14493 270 aaKnown RBP eCLIP4.45□□□□□ -1.72e-8■□□□□ 9.6
SNHG1-220ENST00000544550 NAB2Q15742 525 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 NKG7Q16617 165 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 FAM187BQ17R55 369 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 DCAF4L1Q3SXM0 396 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 HSF5Q4G112 596 aaPredicted RBP4.45□□□□□ -1.7
SNHG1-220ENST00000544550 NKAPLQ5M9Q1 402 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 GPR158Q5T848 1215 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 B3GNT9Q6UX72 402 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 SLC36A4Q6YBV0 504 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 ARMCX6Q7L4S7 300 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 UBE3DQ7Z6J8 389 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 TMC8Q8IU68 726 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 ZBTB8OSQ8IWT0 167 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 SLFN12Q8IYM2 578 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 CPA6Q8N4T0 437 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 ENGASEQ8NFI3 743 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 OLIG1Q8TAK6 271 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 PIP4K2CQ8TBX8 421 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 ISL2Q96A47 359 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 FCRL3Q96P31 734 aaPredicted RBP4.45□□□□□ -1.7
SNHG1-220ENST00000544550 LRRC3BQ96PB8 259 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 CDC6Q99741 560 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 FAM83CQ9BQN1 747 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 KRTAP4-9Q9BYQ8 210 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 ZDHHC5Q9C0B5 715 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 OSBPL2Q9H1P3 480 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 TNKS2Q9H2K2 1166 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 EBF3Q9H4W6 596 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 FAM124BQ9H5Z6 455 aaPredicted RBP4.45□□□□□ -1.7
SNHG1-220ENST00000544550 PRORYQ9H606 182 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 ACSS3Q9H6R3 686 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 GKN1Q9NS71 199 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 TMEM74BQ9NUR3 256 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 SIRPGQ9P1W8 387 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 SUSD2Q9UGT4 822 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 PILRBQ9UKJ0 227 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 INVSQ9Y283 1065 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 NUB1Q9Y5A7 615 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 WDFY3Q8IZQ1 3526 aa4.45□□□□□ -1.7
SNHG1-220ENST00000544550 SMG1Q96Q15 3661 aaKnown RBP4.45□□□□□ -1.7
SNHG1-220ENST00000544550 WDR81Q562E7 1941 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 CYP3A7-CYP3A51PA0A087WV96 503 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 A0A1W2PQH9 124 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 TRABD2BA6NFA1 517 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 PODXLO00592 558 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 B4GALT5O43286 388 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 SART1O43290 800 aaKnown RBP4.44□□□□□ -1.7
SNHG1-220ENST00000544550 ZBTB43O43298 467 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 RNGTTO60942 597 aaKnown RBP4.44□□□□□ -1.7
SNHG1-220ENST00000544550 PRAMEF12O95522 483 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 HLA-EP13747 358 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 GNSP15586 552 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 GLB1P16278 677 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 CYP3A7P24462 503 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 GABRR2P28476 465 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 MARCKSP29966 332 aaPredicted RBP4.44□□□□□ -1.7
SNHG1-220ENST00000544550 RPL9P32969 192 aaKnown RBP4.44□□□□□ -1.7
SNHG1-220ENST00000544550 GJA4P35212 333 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 ARL2P36404 184 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 EIF2S3P41091 472 aaKnown RBP4.44□□□□□ -1.7
SNHG1-220ENST00000544550 P2RY2P41231 377 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 PTGER3P43115 390 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 BRCC3P46736 316 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 YARSP54577 528 aaKnown RBP4.44□□□□□ -1.7
SNHG1-220ENST00000544550 MRPS21P82921 87 aaKnown RBP4.44□□□□□ -1.7
SNHG1-220ENST00000544550 AKAP17AQ02040 695 aaKnown RBP4.44□□□□□ -1.7
SNHG1-220ENST00000544550 RHDQ02161 417 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 SRSF1Q07955 248 aaKnown RBP eCLIP4.44□□□□□ -1.75e-12■■□□□ 12.5
SNHG1-220ENST00000544550 CAPSQ13938 189 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 VEPH1Q14D04 833 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 CRY1Q16526 586 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 TAF1BQ53T94 588 aaPredicted RBP4.44□□□□□ -1.7
SNHG1-220ENST00000544550 ARSHQ5FYA8 562 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 XKR9Q5GH70 373 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 STXBP5Q5T5C0 1151 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 APOA5Q6Q788 366 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 MOXD1Q6UVY6 613 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 NLRC3Q7RTR2 1065 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 GPR155Q7Z3F1 870 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 TTC30AQ86WT1 665 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 CDR2LQ86X02 465 aaPredicted RBP4.44□□□□□ -1.7
SNHG1-220ENST00000544550 RAB11FIP4Q86YS3 637 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 SMYD4Q8IYR2 804 aaPredicted RBP4.44□□□□□ -1.7
SNHG1-220ENST00000544550 PNPLA1Q8N8W4 532 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 DAGLBQ8NCG7 672 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 FAM13CQ8NE31 585 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 MDGA1Q8NFP4 955 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 BEST2Q8NFU1 509 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 EZH1Q92800 747 aaPredicted RBP4.44□□□□□ -1.7
SNHG1-220ENST00000544550 ATP2A3Q93084 1043 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 PSMG2Q969U7 264 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 NXPE2Q96DL1 559 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 FAM20AQ96MK3 541 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 CCDC43Q96MW1 224 aaKnown RBP4.44□□□□□ -1.7
SNHG1-220ENST00000544550 CAMK1GQ96NX5 476 aa4.44□□□□□ -1.7
SNHG1-220ENST00000544550 PPP1R10Q96QC0 940 aaKnown RBP4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms