RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 CELF2O95319 508 aaKnown RBP13.03□□□□□ -0.32
RNF4-222ENST00000541204 CYP3A5P20815 502 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 AKAP5P24588 427 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 GCKP35557 465 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 CCNHP51946 323 aaPredicted RBP13.03□□□□□ -0.32
RNF4-222ENST00000541204 SESN3P58005 492 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 FAM187BQ17R55 369 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 DSTYKQ6XUX3 929 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 C4orf50Q6ZRC1 276 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 BBS12Q6ZW61 710 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 CATSPER4Q7RTX7 472 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 SERAC1Q96JX3 654 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 ZMAT2Q96NC0 199 aaKnown RBP13.03□□□□□ -0.32
RNF4-222ENST00000541204 KLK14Q9P0G3 267 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 TUBGCP4Q9UGJ1 667 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.03□□□□□ -0.326e-6■■■■■ 55.1
RNF4-222ENST00000541204 CCDC189A1A4V9 331 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 HAUS5O94927 633 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 MT-ND3P03897 115 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 PDHA1P08559 390 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 SERPINB3P29508 390 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 ARFIP2P53365 341 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 RBP5P82980 135 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 OR6B2Q6IFH4 312 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 ANO7Q6IWH7 933 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 EP400NLQ6ZTU2 488 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 APBB1IPQ7Z5R6 666 aaPredicted RBP13.02□□□□□ -0.32
RNF4-222ENST00000541204 PLEKHH3Q7Z736 793 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 ACOT1Q86TX2 421 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 SESTD1Q86VW0 696 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 RFX6Q8HWS3 928 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.02□□□□□ -0.323e-6■■■■■ 69.6
RNF4-222ENST00000541204 KCTD6Q8NC69 237 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 TTC17Q96AE7 1141 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 FAM111AQ96PZ2 611 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 LHX5Q9H2C1 402 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 GBA2Q9HCG7 927 aaPredicted RBP13.02□□□□□ -0.32
RNF4-222ENST00000541204 TSPAN16Q9UKR8 245 aa13.02□□□□□ -0.32
RNF4-222ENST00000541204 E5RJQ4 531 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 CCDC22O60826 627 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 KRT7P08729 469 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 NEFHP12036 1026 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 P4HA1P13674 534 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 PEX19P40855 299 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 ELK3P41970 407 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 GPD2P43304 727 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 EIF3EP60228 445 aaKnown RBP13.02□□□□□ -0.33
RNF4-222ENST00000541204 ZNF200P98182 395 aaPredicted RBP13.02□□□□□ -0.33
RNF4-222ENST00000541204 PTK7Q13308 1070 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 HADHQ16836 314 aaKnown RBP13.02□□□□□ -0.33
RNF4-222ENST00000541204 C15orf59Q2T9L4 293 aaPredicted RBP13.02□□□□□ -0.33
RNF4-222ENST00000541204 TTC13Q8NBP0 860 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 ALKBH8Q96BT7 664 aaKnown RBP13.02□□□□□ -0.33
RNF4-222ENST00000541204 PTCD3Q96EY7 689 aaKnown RBP13.02□□□□□ -0.33
RNF4-222ENST00000541204 MRPL45Q9BRJ2 306 aaKnown RBP13.02□□□□□ -0.33
RNF4-222ENST00000541204 BTBD10Q9BSF8 475 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 TMEM120AQ9BXJ8 343 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 DCLRE1BQ9H816 532 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 KCNK13Q9HB14 408 aa13.02□□□□□ -0.33
RNF4-222ENST00000541204 ATP6V1C1P21283 382 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 BGNP21810 368 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 MIPP30301 263 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 GCLCP48506 637 aaPredicted RBP13.01□□□□□ -0.33
RNF4-222ENST00000541204 MMRN1Q13201 1228 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 GRB14Q14449 540 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 KBTBD12Q3ZCT8 623 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 CYTH2Q99418 400 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 PHACTR1Q9C0D0 580 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 ABHD16BQ9H3Z7 469 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 NXF3Q9H4D5 531 aaKnown RBP13.01□□□□□ -0.33
RNF4-222ENST00000541204 ZFATQ9P243 1243 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 BARX2Q9UMQ3 279 aaPredicted RBP13.01□□□□□ -0.33
RNF4-222ENST00000541204 EFR3BQ9Y2G0 817 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 TCRBV9S1A1TA0A576 114 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 RBM47A0AV96 593 aaKnown RBP13.01□□□□□ -0.33
RNF4-222ENST00000541204 A6NHS1 94 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 KBTBD13C9JR72 458 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 LINGO3P0C6S8 592 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 PYGBP11216 843 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 HOXA11P31270 313 aaPredicted RBP13.01□□□□□ -0.33
RNF4-222ENST00000541204 ZBTB16Q05516 673 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 POU5F1BQ06416 359 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 FAAP100Q0VG06 881 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 DPYSL3Q14195 570 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 GOLGA7BQ2TAP0 167 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 SCYL2Q6P3W7 929 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 NPNTQ6UXI9 565 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 TEX9Q8N6V9 391 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 C7orf31Q8N865 590 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 GTF3C2Q8WUA4 911 aaPredicted RBP13.01□□□□□ -0.33
RNF4-222ENST00000541204 IKBKGQ9Y6K9 419 aa13.01□□□□□ -0.33
RNF4-222ENST00000541204 GYG2O15488 501 aa13□□□□□ -0.33
RNF4-222ENST00000541204 GSC2O15499 205 aa13□□□□□ -0.33
RNF4-222ENST00000541204 HNRNPCL1O60812 293 aaKnown RBP13□□□□□ -0.33
RNF4-222ENST00000541204 AVILO75366 819 aa13□□□□□ -0.33
RNF4-222ENST00000541204 RNF8O76064 485 aa13□□□□□ -0.33
RNF4-222ENST00000541204 MAP3K6O95382 1288 aa13□□□□□ -0.33
RNF4-222ENST00000541204 RBP3P10745 1247 aa13□□□□□ -0.33
RNF4-222ENST00000541204 ATICP31939 592 aa13□□□□□ -0.33
RNF4-222ENST00000541204 ETV4P43268 484 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms