RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-218ENST00000540963 NACA2Q9H009 215 aa28.38■■■□□ 2.13
CHFR-218ENST00000540963 FSCN3Q9NQT6 498 aa28.38■■■□□ 2.13
CHFR-218ENST00000540963 MARK1Q9P0L2 795 aa28.38■■■□□ 2.13
CHFR-218ENST00000540963 WDR35Q9P2L0 1181 aa28.38■■■□□ 2.13
CHFR-218ENST00000540963 CGNQ9P2M7 1197 aaKnown RBP28.38■■■□□ 2.13
CHFR-218ENST00000540963 NXF1Q9UBU9 619 aaKnown RBP28.38■■■□□ 2.13
CHFR-218ENST00000540963 FREM2Q5SZK8 3169 aa28.38■■■□□ 2.13
CHFR-218ENST00000540963 ANKRD11Q6UB99 2663 aaPredicted RBP28.38■■■□□ 2.13
CHFR-218ENST00000540963 FASNP49327 2511 aaKnown RBP28.37■■■□□ 2.13
CHFR-218ENST00000540963 MYH10P35580 1976 aa28.37■■■□□ 2.13
CHFR-218ENST00000540963 GFRA2O00451 464 aa28.37■■■□□ 2.13
CHFR-218ENST00000540963 PAQR9Q6ZVX9 377 aa28.37■■■□□ 2.13
CHFR-218ENST00000540963 PROSER1Q86XN7 944 aa28.37■■■□□ 2.13
CHFR-218ENST00000540963 MIB1Q86YT6 1006 aa28.37■■■□□ 2.13
CHFR-218ENST00000540963 CHPFQ8IZ52 775 aa28.37■■■□□ 2.13
CHFR-218ENST00000540963 CHCHD4Q8N4Q1 142 aa28.37■■■□□ 2.13
CHFR-218ENST00000540963 DEFB119Q8N690 84 aa28.37■■■□□ 2.13
CHFR-218ENST00000540963 ZNF516Q92618 1163 aa28.37■■■□□ 2.13
CHFR-218ENST00000540963 FOXJ1Q92949 421 aa28.37■■■□□ 2.13
CHFR-218ENST00000540963 HSPA12BQ96MM6 686 aa28.37■■■□□ 2.13
CHFR-218ENST00000540963 FBXO44Q9H4M3 255 aa28.37■■■□□ 2.13
CHFR-218ENST00000540963 DNAJC17Q9NVM6 304 aaKnown RBP28.37■■■□□ 2.13
CHFR-218ENST00000540963 GJB3O75712 270 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 NDUFV2P19404 249 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 FAM193AP78312 1265 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 FAM26FQ5R3K3 315 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 SYCP2LQ5T4T6 812 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 EGFLAMQ63HQ2 1017 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 FAM173BQ6P4H8 233 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 C12orf56Q8IXR9 622 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 TRIML1Q8N9V2 468 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 USP28Q96RU2 1077 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 MED10Q9BTT4 135 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 ZDHHC5Q9C0B5 715 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 GMIPQ9P107 970 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 NBEAQ8NFP9 2946 aa28.36■■■□□ 2.13
CHFR-218ENST00000540963 TLR5O60602 858 aa28.35■■■□□ 2.13
CHFR-218ENST00000540963 GNSP15586 552 aa28.35■■■□□ 2.13
CHFR-218ENST00000540963 AP3M2P53677 418 aa28.35■■■□□ 2.13
CHFR-218ENST00000540963 E2F4Q16254 413 aa28.35■■■□□ 2.13
CHFR-218ENST00000540963 SCFD1Q8WVM8 642 aa28.35■■■□□ 2.13
CHFR-218ENST00000540963 GZF1Q9H116 711 aaPredicted RBP28.35■■■□□ 2.13
CHFR-218ENST00000540963 UTP3Q9NQZ2 479 aaKnown RBP eCLIP28.35■■■□□ 2.134e-7■■■■■ 115.9
CHFR-218ENST00000540963 TLR8Q9NR97 1041 aaKnown RBP28.35■■■□□ 2.13
CHFR-218ENST00000540963 NFE2L3Q9Y4A8 694 aa28.35■■■□□ 2.13
CHFR-218ENST00000540963 GREM1O60565 184 aa28.34■■■□□ 2.13
CHFR-218ENST00000540963 TYRP14679 529 aa28.34■■■□□ 2.13
CHFR-218ENST00000540963 SYT1P21579 422 aa28.34■■■□□ 2.13
CHFR-218ENST00000540963 WASP42768 502 aa28.34■■■□□ 2.13
CHFR-218ENST00000540963 CYP2J2P51589 502 aa28.34■■■□□ 2.13
CHFR-218ENST00000540963 ASIC1P78348 528 aa28.34■■■□□ 2.13
CHFR-218ENST00000540963 GOLGA8FQ08AF8 430 aa28.34■■■□□ 2.13
CHFR-218ENST00000540963 GOLGA8DPQ0D2H9 430 aa28.34■■■□□ 2.13
CHFR-218ENST00000540963 TRIP6Q15654 476 aaKnown RBP28.34■■■□□ 2.13
CHFR-218ENST00000540963 ADAMTS14Q8WXS8 1223 aa28.34■■■□□ 2.13
CHFR-218ENST00000540963 WBP2Q969T9 261 aa28.34■■■□□ 2.13
CHFR-218ENST00000540963 BBS2Q9BXC9 721 aa28.34■■■□□ 2.13
CHFR-218ENST00000540963 CSNK1G1Q9HCP0 422 aa28.34■■■□□ 2.13
CHFR-218ENST00000540963 CYP8B1Q9UNU6 501 aa28.34■■■□□ 2.13
CHFR-218ENST00000540963 TRIM24O15164 1050 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 PHACTR2O75167 634 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 NDUFS2O75306 463 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 AP1G2O75843 785 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 NASPP49321 788 aaPredicted RBP28.33■■■□□ 2.13
CHFR-218ENST00000540963 PLEKHG6Q3KR16 790 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 ZNF667Q5HYK9 610 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 WDR45BQ5MNZ6 344 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 METTL3Q86U44 580 aaKnown RBP28.33■■■□□ 2.13
CHFR-218ENST00000540963 FUKQ8N0W3 1084 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 MRGPRX1Q96LB2 322 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 ACOX2Q99424 681 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 KLF16Q9BXK1 252 aaPredicted RBP28.33■■■□□ 2.13
CHFR-218ENST00000540963 ZSCAN16Q9H4T2 348 aaPredicted RBP28.33■■■□□ 2.13
CHFR-218ENST00000540963 SMYD3Q9H7B4 428 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 CYLDQ9NQC7 956 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 KRT82Q9NSB4 513 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 LSM7Q9UK45 103 aaKnown RBP28.33■■■□□ 2.13
CHFR-218ENST00000540963 PCDHB9Q9Y5E1 797 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 ADAMTS20P59510 1910 aa28.33■■■□□ 2.13
CHFR-218ENST00000540963 NEDD8-MDP1E9PL57 170 aa28.32■■■□□ 2.12
CHFR-218ENST00000540963 TAF4O00268 1085 aa28.32■■■□□ 2.12
CHFR-218ENST00000540963 CLIC2O15247 247 aa28.32■■■□□ 2.12
CHFR-218ENST00000540963 IRF1P10914 325 aa28.32■■■□□ 2.12
CHFR-218ENST00000540963 ZNF132P52740 706 aa28.32■■■□□ 2.12
CHFR-218ENST00000540963 CDH8P55286 799 aa28.32■■■□□ 2.12
CHFR-218ENST00000540963 EHHADHQ08426 723 aa28.32■■■□□ 2.12
CHFR-218ENST00000540963 ZNF699Q32M78 642 aa28.32■■■□□ 2.12
CHFR-218ENST00000540963 RGL4Q8IZJ4 473 aa28.32■■■□□ 2.12
CHFR-218ENST00000540963 BACH2Q9BYV9 841 aa28.32■■■□□ 2.12
CHFR-218ENST00000540963 PRRT4C9JH25 899 aa28.31■■■□□ 2.12
CHFR-218ENST00000540963 ATP5C1P36542 298 aaKnown RBP28.31■■■□□ 2.12
CHFR-218ENST00000540963 CLDN10P78369 228 aa28.31■■■□□ 2.12
CHFR-218ENST00000540963 BMT2Q1RMZ1 405 aa28.31■■■□□ 2.12
CHFR-218ENST00000540963 KLHDC10Q6PID8 442 aa28.31■■■□□ 2.12
CHFR-218ENST00000540963 ZMIZ2Q8NF64 920 aa28.31■■■□□ 2.12
CHFR-218ENST00000540963 OR2I1PQ8NGU4 316 aa28.31■■■□□ 2.12
CHFR-218ENST00000540963 C7orf25Q9BPX7 421 aa28.31■■■□□ 2.12
CHFR-218ENST00000540963 NPC1O15118 1278 aa28.3■■■□□ 2.12
CHFR-218ENST00000540963 SH3BP5O60239 455 aa28.3■■■□□ 2.12
CHFR-218ENST00000540963 P4HA1P13674 534 aa28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms