RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 MARCH5Q9NX47 278 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 UVRAGQ9P2Y5 699 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 KIAA1257Q9ULG3 409 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 SNX12Q9UMY4 172 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 POLIQ9UNA4 740 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 INVSQ9Y283 1065 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 C2CD2Q9Y426 696 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 GON4LQ3T8J9 2241 aa8.85□□□□□ -0.99
CHD4-208ENST00000540960 FBN2P35556 2912 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 VWA8A3KMH1 1905 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 NBPF19A0A087WUL8 3843 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 TISP43B9A030 160 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 CAPN9O14815 690 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 CLSTN1O94985 981 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 LSM8O95777 96 aaKnown RBP8.84□□□□□ -0.99
CHD4-208ENST00000540960 STAU1O95793 577 aaKnown RBP8.84□□□□□ -0.99
CHD4-208ENST00000540960 EFEMP2O95967 443 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 PLEKP08567 350 aaPredicted RBP8.84□□□□□ -0.99
CHD4-208ENST00000540960 KRT5P13647 590 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 RDXP35241 583 aaKnown RBP8.84□□□□□ -0.99
CHD4-208ENST00000540960 ACOT2P49753 483 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 NLRP11P59045 1033 aaKnown RBP8.84□□□□□ -0.99
CHD4-208ENST00000540960 MYO1EQ12965 1108 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 CUL2Q13617 745 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 BRD3Q15059 726 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 ENOX2Q16206 610 aaKnown RBP8.84□□□□□ -0.99
CHD4-208ENST00000540960 ZNF423Q2M1K9 1284 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 NOMO2Q5JPE7 1267 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 NOTUMQ6P988 496 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 TXNDC11Q6PKC3 985 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 UBL4BQ8N7F7 174 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 TAS1R2Q8TE23 839 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 CAMK1GQ96NX5 476 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 ACAP3Q96P50 834 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 HERC2P3Q9BVR0 1158 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 CARD6Q9BX69 1037 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 NIF3L1Q9GZT8 377 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 LACRTQ9GZZ8 138 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 ISCUQ9H1K1 167 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 PDE11AQ9HCR9 933 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 MRPL47Q9HD33 250 aaKnown RBP8.84□□□□□ -0.99
CHD4-208ENST00000540960 SEPT11Q9NVA2 429 aaKnown RBP8.84□□□□□ -0.99
CHD4-208ENST00000540960 DNMT3BQ9UBC3 853 aaKnown RBP8.84□□□□□ -0.99
CHD4-208ENST00000540960 MBD1Q9UIS9 605 aaPredicted RBP8.84□□□□□ -0.99
CHD4-208ENST00000540960 DNMT3LQ9UJW3 386 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 KIF26AQ9ULI4 1882 aaPredicted RBP8.84□□□□□ -0.99
CHD4-208ENST00000540960 CNTN6Q9UQ52 1028 aa8.84□□□□□ -0.99
CHD4-208ENST00000540960 NCANO14594 1321 aa8.83□□□□□ -1
CHD4-208ENST00000540960 A0A1B0GUA9 196 aa8.83□□□□□ -1
CHD4-208ENST00000540960 TARSL2A2RTX5 802 aaKnown RBP8.83□□□□□ -1
CHD4-208ENST00000540960 DDX3XO00571 662 aaKnown RBP eCLIP8.83□□□□□ -1
CHD4-208ENST00000540960 NRP1O14786 923 aa8.83□□□□□ -1
CHD4-208ENST00000540960 ZNF263O14978 683 aa8.83□□□□□ -1
CHD4-208ENST00000540960 TADA3O75528 432 aa8.83□□□□□ -1
CHD4-208ENST00000540960 CSDE1O75534 798 aaKnown RBP8.83□□□□□ -1
CHD4-208ENST00000540960 MTA2O94776 668 aa8.83□□□□□ -1
CHD4-208ENST00000540960 KIF4AO95239 1232 aa8.83□□□□□ -1
CHD4-208ENST00000540960 ASS1P00966 412 aaKnown RBP8.83□□□□□ -1
CHD4-208ENST00000540960 CYP11B1P15538 503 aa8.83□□□□□ -1
CHD4-208ENST00000540960 GDI1P31150 447 aa8.83□□□□□ -1
CHD4-208ENST00000540960 CETN2P41208 172 aa8.83□□□□□ -1
CHD4-208ENST00000540960 GRM5P41594 1212 aa8.83□□□□□ -1
CHD4-208ENST00000540960 GLUD2P49448 558 aa8.83□□□□□ -1
CHD4-208ENST00000540960 CLCN3P51790 818 aa8.83□□□□□ -1
CHD4-208ENST00000540960 RBP5P82980 135 aa8.83□□□□□ -1
CHD4-208ENST00000540960 RNASELQ05823 741 aaKnown RBP8.83□□□□□ -1
CHD4-208ENST00000540960 STILQ15468 1287 aa8.83□□□□□ -1
CHD4-208ENST00000540960 SLC5A9Q2M3M2 681 aa8.83□□□□□ -1
CHD4-208ENST00000540960 CRELD2Q6UXH1 353 aaPredicted RBP8.83□□□□□ -1
CHD4-208ENST00000540960 CATSPER4Q7RTX7 472 aa8.83□□□□□ -1
CHD4-208ENST00000540960 ZNF572Q7Z3I7 529 aaPredicted RBP8.83□□□□□ -1
CHD4-208ENST00000540960 PEX26Q7Z412 305 aa8.83□□□□□ -1
CHD4-208ENST00000540960 RNF168Q8IYW5 571 aaPredicted RBP8.83□□□□□ -1
CHD4-208ENST00000540960 ADAMTS14Q8WXS8 1223 aa8.83□□□□□ -1
CHD4-208ENST00000540960 ANKRD7Q92527 254 aa8.83□□□□□ -1
CHD4-208ENST00000540960 ELSPBP1Q96BH3 223 aa8.83□□□□□ -1
CHD4-208ENST00000540960 SYT11Q9BT88 431 aa8.83□□□□□ -1
CHD4-208ENST00000540960 TRMT61BQ9BVS5 477 aaKnown RBP8.83□□□□□ -1
CHD4-208ENST00000540960 ACBD3Q9H3P7 528 aa8.83□□□□□ -1
CHD4-208ENST00000540960 VRTNQ9H8Y1 702 aa8.83□□□□□ -1
CHD4-208ENST00000540960 IFT122Q9HBG6 1241 aa8.83□□□□□ -1
CHD4-208ENST00000540960 FSCN3Q9NQT6 498 aa8.83□□□□□ -1
CHD4-208ENST00000540960 DKK4Q9UBT3 224 aa8.83□□□□□ -1
CHD4-208ENST00000540960 AMFRQ9UKV5 643 aa8.83□□□□□ -1
CHD4-208ENST00000540960 ITGA11Q9UKX5 1188 aa8.83□□□□□ -1
CHD4-208ENST00000540960 NENFQ9UMX5 172 aa8.83□□□□□ -1
CHD4-208ENST00000540960 FAN1Q9Y2M0 1017 aa8.83□□□□□ -1
CHD4-208ENST00000540960 FLNCQ14315 2725 aa8.82□□□□□ -1
CHD4-208ENST00000540960 UTP20O75691 2785 aaKnown RBP8.82□□□□□ -1
CHD4-208ENST00000540960 A0A087WZ62 844 aa8.82□□□□□ -1
CHD4-208ENST00000540960 B8ZZF3 427 aa8.82□□□□□ -1
CHD4-208ENST00000540960 CYP26A1O43174 497 aa8.82□□□□□ -1
CHD4-208ENST00000540960 MOCS3O95396 460 aa8.82□□□□□ -1
CHD4-208ENST00000540960 FTLP02792 175 aaPredicted RBP8.82□□□□□ -1
CHD4-208ENST00000540960 ALDH2P05091 517 aa8.82□□□□□ -1
CHD4-208ENST00000540960 PAEPP09466 180 aa8.82□□□□□ -1
CHD4-208ENST00000540960 FAM163BP0C2L3 166 aa8.82□□□□□ -1
CHD4-208ENST00000540960 HARSP12081 509 aaKnown RBP8.82□□□□□ -1
CHD4-208ENST00000540960 SKIP12755 728 aa8.82□□□□□ -1
CHD4-208ENST00000540960 DARSP14868 501 aaKnown RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms