RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 IFRD1O00458 451 aaPredicted RBP14.7□□□□□ -0.06
COLCA1-204ENST00000540738 PPFIA2O75334 1257 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 PNMA6AP0CW24 399 aaPredicted RBP14.7□□□□□ -0.06
COLCA1-204ENST00000540738 CD44P16070 742 aaKnown RBP14.7□□□□□ -0.06
COLCA1-204ENST00000540738 SPDYE7PQ495Y7 208 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 SLC47A2Q86VL8 602 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 ETNPPLQ8TBG4 499 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 BTBD6Q96KE9 485 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 ULBP1Q9BZM6 244 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 BAIAP2L1Q9UHR4 511 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 PLIN4Q96Q06 1357 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 SOAT2O75908 522 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 ACLYP53396 1101 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 MDM2Q00987 491 aaPredicted RBP14.7□□□□□ -0.06
COLCA1-204ENST00000540738 PKN3Q6P5Z2 889 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 SLC13A5Q86YT5 568 aaPredicted RBP14.7□□□□□ -0.06
COLCA1-204ENST00000540738 NPAS4Q8IUM7 802 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 TC2NQ8N9U0 490 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 RIPOR3Q96MK2 946 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 HSD17B14Q9BPX1 270 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 APOL5Q9BWW9 433 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 TARSL2A2RTX5 802 aaKnown RBP14.7□□□□□ -0.06
COLCA1-204ENST00000540738 SUPT3HB4E1H0 165 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 SUPT3HO75486 399 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 ITGB3BPQ13352 177 aaPredicted RBP14.7□□□□□ -0.06
COLCA1-204ENST00000540738 DEFB106AQ8N104 65 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 NUP93Q8N1F7 819 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 TPCN2Q8NHX9 752 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 PPP1R13LQ8WUF5 828 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 SRP72O76094 671 aaKnown RBP14.7□□□□□ -0.06
COLCA1-204ENST00000540738 SEC31AO94979 1220 aaKnown RBP14.7□□□□□ -0.06
COLCA1-204ENST00000540738 JCHAINP01591 159 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 GRK3P35626 688 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 RAB30Q15771 203 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 OLFML2BQ68BL8 750 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 EXD1Q8NHP7 514 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 C1QTNF3-AMACRE9PGA6 284 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 CLTBP09497 229 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 CCL5P13501 91 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 TGM2P21980 687 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 MAPK8P45983 427 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 PPP3CCP48454 512 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 ABCE1P61221 599 aaKnown RBP14.7□□□□□ -0.06
COLCA1-204ENST00000540738 MTBPQ96DY7 904 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 CREBZFQ9NS37 354 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 MRGBPQ9NV56 204 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 FBXO10Q9UK96 956 aa14.7□□□□□ -0.06
COLCA1-204ENST00000540738 DDHD2O94830 711 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 NFICP08651 508 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 CDH8P55286 799 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 SYCP2LQ5T4T6 812 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 RASAL3Q86YV0 1011 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 PDCD7Q8N8D1 485 aaKnown RBP14.69□□□□□ -0.06
COLCA1-204ENST00000540738 SLC35C1Q96A29 364 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 FAM167BQ9BTA0 163 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 RBM22Q9NW64 420 aaKnown RBP eCLIP14.69□□□□□ -0.06
COLCA1-204ENST00000540738 GPATCH2LQ9NWQ4 482 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 A0A0G2JND7 137 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 KPNA3O00505 521 aaPredicted RBP14.69□□□□□ -0.06
COLCA1-204ENST00000540738 TREHO43280 583 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 CCDC130P13994 396 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 PLCL1Q15111 1095 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 DNAJC7Q99615 494 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 UBA2Q9UBT2 640 aaPredicted RBP14.69□□□□□ -0.06
COLCA1-204ENST00000540738 CHMP2BQ9UQN3 213 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 USP20Q9Y2K6 914 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 ESYT3A0FGR9 886 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 USP17L7P0C7H9 530 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 NOS2P35228 1153 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 CAMK2GQ13555 558 aaPredicted RBP14.69□□□□□ -0.06
COLCA1-204ENST00000540738 EFTUD2Q15029 972 aaKnown RBP eCLIP14.69□□□□□ -0.06
COLCA1-204ENST00000540738 CNGA2Q16280 664 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 SPDYAQ5MJ70 313 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 IRAK1BP1Q5VVH5 260 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 RBM23Q86U06 439 aaKnown RBP14.69□□□□□ -0.06
COLCA1-204ENST00000540738 EMC1Q8N766 993 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 TASP1Q9H6P5 420 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 RAD18Q9NS91 495 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 NDE1Q9NXR1 346 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 SELENONQ9NZV5 590 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 IGF2BP3O00425 579 aaKnown RBP eCLIP14.69□□□□□ -0.06
COLCA1-204ENST00000540738 DYRK3O43781 588 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 ADH1CP00326 375 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 COBLL1Q53SF7 1204 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 B3GALNT2Q8NCR0 500 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 SMG7Q92540 1137 aaKnown RBP14.69□□□□□ -0.06
COLCA1-204ENST00000540738 SPDL1Q96EA4 605 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 SPATA17Q96L03 361 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 OMDQ99983 421 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 PSMC3IPQ9P2W1 217 aaPredicted RBP14.69□□□□□ -0.06
COLCA1-204ENST00000540738 SEPT3Q9UH03 358 aa14.69□□□□□ -0.06
COLCA1-204ENST00000540738 SMG5Q9UPR3 1016 aaKnown RBP14.69□□□□□ -0.06
COLCA1-204ENST00000540738 A0A087X0T9 212 aa14.68□□□□□ -0.06
COLCA1-204ENST00000540738 A0A0A6YYK5 440 aaPredicted RBP14.68□□□□□ -0.06
COLCA1-204ENST00000540738 CDH16O75309 829 aa14.68□□□□□ -0.06
COLCA1-204ENST00000540738 FAM228BP0C875 321 aa14.68□□□□□ -0.06
COLCA1-204ENST00000540738 ARF4P18085 180 aaPredicted RBP14.68□□□□□ -0.06
COLCA1-204ENST00000540738 OR1D2P34982 312 aa14.68□□□□□ -0.06
COLCA1-204ENST00000540738 BCL2L1Q07817 233 aa14.68□□□□□ -0.06
COLCA1-204ENST00000540738 MUM1Q2TAK8 710 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms