RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 PYM1Q9BRP8 204 aaKnown RBP9.8□□□□□ -0.84
CLIP1-214ENST00000540539 RIOK1Q9BRS2 568 aaKnown RBP9.8□□□□□ -0.84
CLIP1-214ENST00000540539 SMARCAD1Q9H4L7 1026 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 EHMT1Q9H9B1 1298 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 RYDENQ9NUL5 291 aaKnown RBP9.8□□□□□ -0.84
CLIP1-214ENST00000540539 RIC8BQ9NVN3 520 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 SNTG2Q9NY99 539 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 TXNDC16Q9P2K2 825 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 APOBEC2Q9Y235 224 aaKnown RBP9.8□□□□□ -0.84
CLIP1-214ENST00000540539 COL4A1P02462 1669 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 FRMPD4Q14CM0 1322 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 FAM172BPA6NC97 362 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 M0QX08 132 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 POLR1CO15160 346 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-214ENST00000540539 TP73O15350 636 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 CIAO1O76071 339 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 GRK2P25098 689 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 CBX5P45973 191 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 CDKL1Q00532 357 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 RAPGEF1Q13905 1077 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 TRIP13Q15645 432 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-214ENST00000540539 CELF1Q92879 486 aaKnown RBP9.8□□□□□ -0.84
CLIP1-214ENST00000540539 OXNAD1Q96HP4 312 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-214ENST00000540539 CFAP57Q96MR6 1250 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 CLSTN3Q9BQT9 956 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 CCDC77Q9BR77 488 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 SLC2A11Q9BYW1 496 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 RPF2Q9H7B2 306 aaKnown RBP9.8□□□□□ -0.84
CLIP1-214ENST00000540539 SP140LQ9H930 580 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 ANLNQ9NQW6 1124 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 EPS15L1Q9UBC2 864 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 MTO1Q9Y2Z2 717 aaKnown RBP9.8□□□□□ -0.84
CLIP1-214ENST00000540539 ARHGEF35A5YM69 484 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 H3BMQ9 156 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 DDX3YO15523 660 aaKnown RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 JRKO75564 520 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 C8BP07358 591 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 ICAM2P13598 275 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 KRT5P13647 590 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 IFNAR1P17181 557 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 CHRNB2P17787 502 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 CA4P22748 312 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 IL15P40933 162 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 MAP3K7CLP57077 242 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 RPS8P62241 208 aaKnown RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 DLG4P78352 724 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 KCNA1Q09470 495 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 TFCP2Q12800 502 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 SMARCB1Q12824 385 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 PTGDRQ13258 359 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 TFDP1Q14186 410 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 CTTNQ14247 550 aaKnown RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 DALRD3Q5D0E6 543 aaKnown RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 PPP6R3Q5H9R7 873 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 FAM205BPQ63HN1 556 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 ANKRD26P1Q6NSI1 321 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 ALYREFQ86V81 257 aaKnown RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 PRELID2Q8N945 189 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 HIPK4Q8NE63 616 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 RASGRP4Q8TDF6 673 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 OSBP2Q969R2 916 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 COG8Q96MW5 612 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 CDK5RAP1Q96SZ6 601 aaKnown RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 CNNM1Q9NRU3 951 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 GDAP2Q9NXN4 497 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 PCYOX1Q9UHG3 505 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 DNM3Q9UQ16 869 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 C10orf71Q711Q0 1435 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 COL11A2P13942 1736 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 FADS2P1A8MWK0 482 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 E9PMD0 336 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 SLC22A1O15245 554 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 NUAK1O60285 661 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 SORBS2O94875 1100 aaKnown RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 BMP15O95972 392 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 ALOX5P09917 674 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 PCNAP12004 261 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 TBXAS1P24557 533 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 POLR2BP30876 1174 aaKnown RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 CHRNA3P32297 505 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 SLC18A1P54219 525 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 ATP2C1P98194 919 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 TAGLNQ01995 201 aaKnown RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 HIC1Q14526 733 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 DSC3Q14574 896 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 IL17AQ16552 155 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 DGKDQ16760 1214 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 PGS1Q32NB8 556 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 AARS2Q5JTZ9 985 aaKnown RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 PERM1Q5SV97 790 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 PXDC1Q5TGL8 231 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 FAM122CQ6P4D5 195 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 LYSMD3Q7Z3D4 306 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 DSG4Q86SJ6 1040 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 SYCE1Q8N0S2 351 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 C4orf33Q8N1A6 199 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 TERB1Q8NA31 727 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 JADE3Q92613 823 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 SGIP1Q9BQI5 828 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 ZNF717Q9BY31 904 aaPredicted RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms