RNA–Protein interactions for RNA: ENST00000536634.5

CLIP1-207, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-207ENST00000536634 IBTKQ9P2D0 1353 aaPredicted RBP6.6□□□□□ -1.35
CLIP1-207ENST00000536634 ABCC4O15439 1325 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 ASTN2O75129 1339 aaPredicted RBP6.6□□□□□ -1.35
CLIP1-207ENST00000536634 YY2O15391 372 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 PROM1O43490 865 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 PEX1O43933 1283 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 NTSR2O95665 410 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 PIM1P11309 404 aaPredicted RBP6.6□□□□□ -1.35
CLIP1-207ENST00000536634 CXCR5P32302 372 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 NDUFV1P49821 464 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 SIM1P81133 766 aaPredicted RBP6.6□□□□□ -1.35
CLIP1-207ENST00000536634 MRPS35P82673 323 aaKnown RBP6.6□□□□□ -1.35
CLIP1-207ENST00000536634 ZNF169Q14929 603 aaPredicted RBP6.6□□□□□ -1.35
CLIP1-207ENST00000536634 PRR16Q569H4 304 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 SUSD4Q5VX71 490 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 NGEFQ8N5V2 710 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 FAM46DQ8NEK8 389 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 TOR1AIP2Q8NFQ8 470 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 ACTRT2Q8TDY3 377 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 NYXQ9GZU5 481 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 SARS2Q9NP81 518 aaKnown RBP6.6□□□□□ -1.35
CLIP1-207ENST00000536634 SCN9AQ15858 1988 aa6.6□□□□□ -1.35
CLIP1-207ENST00000536634 PAPPA2Q9BXP8 1791 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 LRRC37AA6NMS7 1700 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 COL4A1P02462 1669 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 MAP3K15Q6ZN16 1313 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 A0A0B4J269 797 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 PSMD14O00487 310 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 TUSC2O75896 110 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 UNC5CO95185 931 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 FOLR3P41439 243 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 TUBB3Q13509 450 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 FAM160B1Q5W0V3 765 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 MCM10Q7L590 875 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 DAAM2Q86T65 1068 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 SIMC1Q8NDZ2 872 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 FBXL20Q96IG2 436 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 PDLIM2Q96JY6 352 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 B3GNT5Q9BYG0 378 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 SIK2Q9H0K1 926 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 VPS33BQ9H267 617 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 LRIT1Q9P2V4 623 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 ZNHIT2Q9UHR6 403 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 KNSTRNQ9Y448 316 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.59□□□□□ -1.35
CLIP1-207ENST00000536634 CDH23Q9H251 3354 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 ANKRD36CQ5JPF3 1778 aa6.59□□□□□ -1.35
CLIP1-207ENST00000536634 RTL9Q8NET4 1388 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 PRUNE2Q8WUY3 3088 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 VWC2LB2RUY7 222 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 ERVV-1B6SEH8 477 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 F5H697 171 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 TSPAN6O43657 245 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 CTNND1O60716 968 aaKnown RBP6.58□□□□□ -1.36
CLIP1-207ENST00000536634 NUDT3O95989 172 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 KCNJ5P48544 419 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 PTH2RP49190 550 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 DCTN1Q14203 1278 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 FGL2Q14314 439 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 TNIP1Q15025 636 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 PKN2Q16513 984 aaKnown RBP6.58□□□□□ -1.36
CLIP1-207ENST00000536634 KIAA0895LQ68EN5 471 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 NXNQ6DKJ4 435 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 FBXO46Q6PJ61 603 aaPredicted RBP6.58□□□□□ -1.36
CLIP1-207ENST00000536634 MOB2Q70IA6 237 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 TCEAL8Q8IYN2 117 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 MAGEB6Q8N7X4 407 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 TFAP2BQ92481 460 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 SLC9A6Q92581 669 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 CDCA5Q96FF9 252 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 P2RX7Q99572 595 aaKnown RBP6.58□□□□□ -1.36
CLIP1-207ENST00000536634 R3HDMLQ9H3Y0 253 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 ZMAT3Q9HA38 289 aaKnown RBP6.58□□□□□ -1.36
CLIP1-207ENST00000536634 HESX1Q9UBX0 185 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 HDAC9Q9UKV0 1011 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 RAD54BQ9Y620 910 aa6.58□□□□□ -1.36
CLIP1-207ENST00000536634 RBBP6Q7Z6E9 1792 aaKnown RBP6.58□□□□□ -1.36
CLIP1-207ENST00000536634 KDM3BQ7LBC6 1761 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 ZAR1LA6NP61 321 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 DCLK1O15075 740 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 RHOP08100 348 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 CHRM2P08172 466 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 HSPA5P11021 654 aaKnown RBP6.57□□□□□ -1.36
CLIP1-207ENST00000536634 GCLCP48506 637 aaPredicted RBP6.57□□□□□ -1.36
CLIP1-207ENST00000536634 AGFG1P52594 562 aaKnown RBP6.57□□□□□ -1.36
CLIP1-207ENST00000536634 ZNF134P52741 427 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 NANOS3P60323 173 aaKnown RBP6.57□□□□□ -1.36
CLIP1-207ENST00000536634 RBM20Q5T481 1227 aaKnown RBP6.57□□□□□ -1.36
CLIP1-207ENST00000536634 VPS53Q5VIR6 699 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 SWSAP1Q6NVH7 229 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 NPNTQ6UXI9 565 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 ZNF34Q8IZ26 560 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 B3GALNT2Q8NCR0 500 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 TSR2Q969E8 191 aaKnown RBP6.57□□□□□ -1.36
CLIP1-207ENST00000536634 SLC46A1Q96NT5 459 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 TTYH3Q9C0H2 523 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 RIOX1Q9H6W3 641 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 DBNDD1Q9H9R9 158 aa6.57□□□□□ -1.36
CLIP1-207ENST00000536634 MIS18AQ9NYP9 233 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms