RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 DRG1Q9Y295 367 aaKnown RBP2.99□□□□□ -1.93
SKA3-207ENST00000536239 H3BUI4 141 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 CLIC1O00299 241 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 SPTLC2O15270 562 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 OFD1O75665 1012 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 CAMTA2O94983 1202 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 CD63P08962 238 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 HOXB2P14652 356 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 CREB1P16220 341 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 PDCP20941 246 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 PRKAG1P54619 331 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 ANAPC15P60006 121 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 NKX6-1P78426 367 aaPredicted RBP2.98□□□□□ -1.93
SKA3-207ENST00000536239 RPL36AP83881 106 aaKnown RBP2.98□□□□□ -1.93
SKA3-207ENST00000536239 CFHR3Q02985 330 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 OS9Q13438 667 aaPredicted RBP2.98□□□□□ -1.93
SKA3-207ENST00000536239 KEAP1Q14145 624 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 FAM110CQ1W6H9 321 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 ABCB5Q2M3G0 1257 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 SYDE2Q5VT97 1194 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 DCAF12L1Q5VU92 463 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 TMED8Q6PL24 325 aaPredicted RBP2.98□□□□□ -1.93
SKA3-207ENST00000536239 NPNTQ6UXI9 565 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 GAS2L3Q86XJ1 694 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 COL23A1Q86Y22 540 aaPredicted RBP2.98□□□□□ -1.93
SKA3-207ENST00000536239 MIER2Q8N344 545 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 PRR18Q8N4B5 295 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 PPP2R3CQ969Q6 453 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 MIB2Q96AX9 1013 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 TUBB6Q9BUF5 446 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 SCNM1Q9BWG6 230 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 GBA2Q9HCG7 927 aaPredicted RBP2.98□□□□□ -1.93
SKA3-207ENST00000536239 TMEM45AQ9NWC5 275 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 PCDHA7Q9UN72 937 aa2.98□□□□□ -1.93
SKA3-207ENST00000536239 ZBED9Q6R2W3 1325 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 NACADO15069 1562 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 TMEM272A0A1B0GTI8 110 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 SHTN1A0MZ66 631 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 FSD2A1L4K1 749 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 C2CD4BA6NLJ0 364 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 MYO1CO00159 1063 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 INPPL1O15357 1258 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 LINC01565O15544 149 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 ANP32CO43423 234 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 SPRY2O43597 315 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 TLX3O43711 291 aaPredicted RBP2.97□□□□□ -1.93
SKA3-207ENST00000536239 PLGP00747 810 aaPredicted RBP2.97□□□□□ -1.93
SKA3-207ENST00000536239 TBXAS1P24557 533 aaPredicted RBP2.97□□□□□ -1.93
SKA3-207ENST00000536239 SLC11A2P49281 568 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 RRP1P56182 461 aaKnown RBP2.97□□□□□ -1.93
SKA3-207ENST00000536239 RIPK4P57078 832 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 KRTAP10-12P60413 245 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 PPATQ06203 517 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 LTBQ06643 244 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 LMOD3Q0VAK6 560 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 CCNIQ14094 377 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 ODF1Q14990 250 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 MFSD13AQ14CX5 517 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 PTCHD3Q3KNS1 767 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 KHDC1LQ5JSQ8 128 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 CERCAMQ5T4B2 595 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 NECAB2Q7Z6G3 386 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 ARHGAP30Q7Z6I6 1101 aaPredicted RBP2.97□□□□□ -1.93
SKA3-207ENST00000536239 NOP9Q86U38 636 aaKnown RBP2.97□□□□□ -1.93
SKA3-207ENST00000536239 BPIFB1Q8TDL5 484 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 RBM28Q9NW13 759 aaKnown RBP2.97□□□□□ -1.93
SKA3-207ENST00000536239 RAI14Q9P0K7 980 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 PCDHA6Q9UN73 950 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 PCDHA12Q9UN75 941 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 COG5Q9UP83 839 aa2.97□□□□□ -1.93
SKA3-207ENST00000536239 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.97□□□□□ -1.93
SKA3-207ENST00000536239 TMPRSS11DO60235 418 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 DTNBO60941 627 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 ZRANB2O95218 330 aaKnown RBP eCLIP2.96□□□□□ -1.94
SKA3-207ENST00000536239 THP07101 528 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 SSR1P43307 286 aaKnown RBP2.96□□□□□ -1.94
SKA3-207ENST00000536239 POLD2P49005 469 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 BCAT1P54687 386 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 GAS1P54826 345 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 P2RX3P56373 397 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 PFKFB3Q16875 520 aaPredicted RBP2.96□□□□□ -1.94
SKA3-207ENST00000536239 CTR9Q6PD62 1173 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 CASC1Q6TDU7 716 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 FAM57BQ71RH2 274 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 RBM23Q86U06 439 aaKnown RBP2.96□□□□□ -1.94
SKA3-207ENST00000536239 PNMA8AQ86V59 439 aaPredicted RBP2.96□□□□□ -1.94
SKA3-207ENST00000536239 CERS3Q8IU89 383 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 TMEM199Q8N511 208 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 BCAS4Q8TDM0 211 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 TRMT61AQ96FX7 289 aaKnown RBP2.96□□□□□ -1.94
SKA3-207ENST00000536239 SLC35A4Q96G79 324 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 KAZALD1Q96I82 304 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 HIC2Q96JB3 615 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 MYH16Q9H6N6 1097 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 PRDM16Q9HAZ2 1276 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 SARS2Q9NP81 518 aaKnown RBP2.96□□□□□ -1.94
SKA3-207ENST00000536239 CD93Q9NPY3 652 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 TRHDEQ9UKU6 1024 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 USP22Q9UPT9 525 aa2.96□□□□□ -1.94
SKA3-207ENST00000536239 MED16Q9Y2X0 877 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms