RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CDH5P33151 784 aaPredicted RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 DEKP35659 375 aaKnown RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 SNX16P57768 344 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 CCZ1BP86790 482 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 CCZ1P86791 482 aaPredicted RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 TSPY1Q01534 308 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 CREMQ03060 361 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 GPR17Q13304 367 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 ORC1Q13415 861 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 GPM6BQ13491 265 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 SPA17Q15506 151 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 NFE2Q16621 373 aaPredicted RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 PTPROQ16827 1216 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 CTXN3Q4LDR2 81 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 TDRD12Q587J7 1177 aaKnown RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 SLC8B1Q6J4K2 584 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 ACAD10Q6JQN1 1059 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 C4orf50Q6ZRC1 276 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 NOP9Q86U38 636 aaKnown RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 TMEM173Q86WV6 379 aaPredicted RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 VPS52Q8N1B4 723 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 WDTC1Q8N5D0 677 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 C12orf29Q8N999 325 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 ANKRD52Q8NB46 1076 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 B3GALNT2Q8NCR0 500 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 TMEM35BQ8NCS4 154 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 ZNF461Q8TAF7 563 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 SPPL3Q8TCT6 385 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 C2orf15Q8WU43 125 aaKnown RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 BCL7CQ8WUZ0 217 aaPredicted RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 SLC35F5Q8WV83 523 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 TFAP2BQ92481 460 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 ZNF830Q96NB3 372 aaPredicted RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 NSUN5Q96P11 429 aaKnown RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 TWNKQ96RR1 684 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 PKMYT1Q99640 499 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.82□□□□□ -1.16
CD44-228ENST00000528455 DUSP16Q9BY84 665 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 ZCWPW1Q9H0M4 648 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 PDCL3Q9H2J4 239 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 DEF6Q9H4E7 631 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 RXFP1Q9HBX9 757 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 NGRNQ9NPE2 291 aaKnown RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 ACP6Q9NPH0 428 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 LUC7LQ9NQ29 371 aaKnown RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 SPTBN5Q9NRC6 3674 aaKnown RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 MRPL17Q9NRX2 175 aaKnown RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 HSFX1Q9UBD0 423 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 MTRRQ9UBK8 725 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 NAGPAQ9UK23 515 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 GTF3C4Q9UKN8 822 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 INTUQ9ULD6 942 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 MYH10P35580 1976 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 KIAA1671Q9BY89 1806 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 A0A087X0T9 212 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 MYBPHLA2RUH7 354 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 H3BNC9 293 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 J3QW42 95 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 O00370 1275 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 DDX3XO00571 662 aaKnown RBP eCLIP7.81□□□□□ -1.16
CD44-228ENST00000528455 EREGO14944 169 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 ABLIM3O94929 683 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 IPO7O95373 1038 aaKnown RBP7.81□□□□□ -1.16
CD44-228ENST00000528455 LSM8O95777 96 aaKnown RBP7.81□□□□□ -1.16
CD44-228ENST00000528455 MMEP08473 750 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 PLEKP08567 350 aaPredicted RBP7.81□□□□□ -1.16
CD44-228ENST00000528455 FAM228BP0C875 321 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 SETSIPP0DME0 302 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 UNGP13051 313 aaPredicted RBP7.81□□□□□ -1.16
CD44-228ENST00000528455 CES1P23141 567 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 CTNNB1P35222 781 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 PBX3P40426 434 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 GPD2P43304 727 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 GLUD2P49448 558 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 SLC8A3P57103 927 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 FMO1Q01740 532 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 RAB33AQ14088 237 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 RTP2Q5QGT7 225 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 CCDC122Q5T0U0 273 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 TPGS2Q68CL5 300 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 ZNF280DQ6N043 979 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 ALKBH5Q6P6C2 394 aaKnown RBP7.81□□□□□ -1.16
CD44-228ENST00000528455 VSTM1Q6UX27 236 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 ZNF662Q6ZS27 426 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 HFE2Q6ZVN8 426 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 PAQR9Q6ZVX9 377 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 CHSY3Q70JA7 882 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 RTL10Q7L3V2 364 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 LRRTM3Q86VH5 581 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 TXLNBQ8N3L3 684 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 MRPL43Q8N983 215 aaKnown RBP7.81□□□□□ -1.16
CD44-228ENST00000528455 RIN2Q8WYP3 895 aaPredicted RBP7.81□□□□□ -1.16
CD44-228ENST00000528455 PMEPA1Q969W9 287 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 MRPL38Q96DV4 380 aaKnown RBP7.81□□□□□ -1.16
CD44-228ENST00000528455 PCED1BQ96HM7 432 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 FUBP3Q96I24 572 aaKnown RBP eCLIP7.81□□□□□ -1.16
CD44-228ENST00000528455 CEP295NLQ96MC4 621 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 SYT15Q9BQS2 421 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 CLSTN3Q9BQT9 956 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 ZSWIM1Q9BR11 485 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms