RNA–Protein interactions for RNA: ENST00000527027.1

PTPRU-210, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 3

Gene PTPRU, Length 619 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-210ENST00000527027 C12orf56Q8IXR9 622 aa17.05■□□□□ 0.32
PTPRU-210ENST00000527027 ZCCHC14Q8WYQ9 949 aaKnown RBP17.05■□□□□ 0.32
PTPRU-210ENST00000527027 DHX58Q96C10 678 aa17.05■□□□□ 0.32
PTPRU-210ENST00000527027 SMARCD1Q96GM5 515 aa17.05■□□□□ 0.32
PTPRU-210ENST00000527027 KLK13Q9UKR3 277 aa17.05■□□□□ 0.32
PTPRU-210ENST00000527027 WDFY3Q8IZQ1 3526 aa17.05■□□□□ 0.32
PTPRU-210ENST00000527027 PI4KAP42356 2102 aa17.05■□□□□ 0.32
PTPRU-210ENST00000527027 MYO18AQ92614 2054 aaKnown RBP17.05■□□□□ 0.32
PTPRU-210ENST00000527027 NBEAQ8NFP9 2946 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 ARHGAP33O14559 1287 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 EXOC3O60645 756 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 CASP4P49662 377 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 AP3M2P53677 418 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 EHHADHQ08426 723 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 BIRC3Q13489 604 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 ZNF699Q32M78 642 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 ZNF667Q5HYK9 610 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 EGFLAMQ63HQ2 1017 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 UNC13DQ70J99 1090 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 CHPFQ8IZ52 775 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 FUKQ8N0W3 1084 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 MINDY1Q8N5J2 469 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 XPO6Q96QU8 1125 aaKnown RBP17.04■□□□□ 0.32
PTPRU-210ENST00000527027 KLF16Q9BXK1 252 aaPredicted RBP17.04■□□□□ 0.32
PTPRU-210ENST00000527027 FBXO44Q9H4M3 255 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 CD248Q9HCU0 757 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 DNAJC17Q9NVM6 304 aaKnown RBP17.04■□□□□ 0.32
PTPRU-210ENST00000527027 WDR35Q9P2L0 1181 aa17.04■□□□□ 0.32
PTPRU-210ENST00000527027 A0A1W2PQD8 194 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 FAM221BA6H8Z2 402 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 GREM1O60565 184 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 TLR5O60602 858 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 PPP6R2O75170 966 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 TBX18O95935 607 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 SYPP08247 313 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 CD59P13987 128 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 PGFP49763 221 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 NCOA4Q13772 614 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 HNRNPDQ14103 355 aaKnown RBP17.03■□□□□ 0.32
PTPRU-210ENST00000527027 KNOP1Q1ED39 458 aaKnown RBP17.03■□□□□ 0.32
PTPRU-210ENST00000527027 BMT2Q1RMZ1 405 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 ACOT1Q86TX2 421 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 SLC41A1Q8IVJ1 513 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 CRYBG2Q8N1P7 616 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 TRIML1Q8N9V2 468 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 ZMIZ2Q8NF64 920 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 PLEKHO2Q8TD55 490 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 PARD3BQ8TEW8 1205 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 IPO4Q8TEX9 1081 aaKnown RBP17.03■□□□□ 0.32
PTPRU-210ENST00000527027 INTS4Q96HW7 963 aaKnown RBP17.03■□□□□ 0.32
PTPRU-210ENST00000527027 ACOX2Q99424 681 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 SMOQ99835 787 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 GABRG3Q99928 467 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 BBS2Q9BXC9 721 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 SDCBP2Q9H190 292 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 CSNK1G1Q9HCP0 422 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 TLR8Q9NR97 1041 aaKnown RBP17.03■□□□□ 0.32
PTPRU-210ENST00000527027 KRT82Q9NSB4 513 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 FREM2Q5SZK8 3169 aa17.03■□□□□ 0.32
PTPRU-210ENST00000527027 ANKRD11Q6UB99 2663 aaPredicted RBP17.02■□□□□ 0.32
PTPRU-210ENST00000527027 PRRT4C9JH25 899 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 NEDD8-MDP1E9PL57 170 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 CACNG3O60359 315 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 CUTAO60888 179 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 BEST1O76090 585 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 CLSTN1O94985 981 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 C4BPAP04003 597 aaKnown RBP17.02■□□□□ 0.32
PTPRU-210ENST00000527027 TYRP14679 529 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 NDUFV2P19404 249 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 ATP5C1P36542 298 aaKnown RBP17.02■□□□□ 0.32
PTPRU-210ENST00000527027 FAM193AP78312 1265 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 CLDN10P78369 228 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 COL9A2Q14055 689 aaPredicted RBP17.02■□□□□ 0.32
PTPRU-210ENST00000527027 ZNF423Q2M1K9 1284 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 LRSAM1Q6UWE0 723 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 SCARA5Q6ZMJ2 495 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 CHCHD4Q8N4Q1 142 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 OR2I1PQ8NGU4 316 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 ZNF419Q96HQ0 510 aaPredicted RBP17.02■□□□□ 0.32
PTPRU-210ENST00000527027 HSPA12BQ96MM6 686 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 FAM124BQ9H5Z6 455 aaPredicted RBP17.02■□□□□ 0.32
PTPRU-210ENST00000527027 MAGEF1Q9HAY2 307 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 SLC39A2Q9NP94 309 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 DNAAF2Q9NVR5 837 aaKnown RBP17.02■□□□□ 0.32
PTPRU-210ENST00000527027 MARK1Q9P0L2 795 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 TFIP11Q9UBB9 837 aaKnown RBP17.02■□□□□ 0.32
PTPRU-210ENST00000527027 CYP8B1Q9UNU6 501 aa17.02■□□□□ 0.32
PTPRU-210ENST00000527027 PLXND1Q9Y4D7 1925 aa17.02■□□□□ 0.31
PTPRU-210ENST00000527027 TNRC6BQ9UPQ9 1833 aaKnown RBP17.01■□□□□ 0.31
PTPRU-210ENST00000527027 PVALEFA0A1B0GWK0 134 aa17.01■□□□□ 0.31
PTPRU-210ENST00000527027 LRRIQ3A6PVS8 624 aaPredicted RBP17.01■□□□□ 0.31
PTPRU-210ENST00000527027 STX6O43752 255 aa17.01■□□□□ 0.31
PTPRU-210ENST00000527027 VNN1O95497 513 aa17.01■□□□□ 0.31
PTPRU-210ENST00000527027 CCDC130P13994 396 aa17.01■□□□□ 0.31
PTPRU-210ENST00000527027 HOXB3P14651 431 aaPredicted RBP17.01■□□□□ 0.31
PTPRU-210ENST00000527027 CASP1P29466 404 aa17.01■□□□□ 0.31
PTPRU-210ENST00000527027 MAP3K7CLP57077 242 aa17.01■□□□□ 0.31
PTPRU-210ENST00000527027 GOLGA8FQ08AF8 430 aa17.01■□□□□ 0.31
PTPRU-210ENST00000527027 GOLGA8DPQ0D2H9 430 aa17.01■□□□□ 0.31
PTPRU-210ENST00000527027 SLC14A1Q13336 389 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms