RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 SLC30A5Q8TAD4 765 aa21.76■■□□□ 1.07
CD44-222ENST00000526025 CPA5Q8WXQ8 436 aa21.76■■□□□ 1.07
CD44-222ENST00000526025 TTC28Q96AY4 2481 aa21.76■■□□□ 1.07
CD44-222ENST00000526025 TDP1Q9NUW8 608 aa21.76■■□□□ 1.07
CD44-222ENST00000526025 SEPT11Q9NVA2 429 aaKnown RBP21.76■■□□□ 1.07
CD44-222ENST00000526025 IMPACTQ9P2X3 320 aa21.76■■□□□ 1.07
CD44-222ENST00000526025 STRIP2Q9ULQ0 834 aa21.76■■□□□ 1.07
CD44-222ENST00000526025 COCHO43405 550 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 EFHC1Q5JVL4 640 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 BTBD8Q5XKL5 378 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 WDR59Q6PJI9 974 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 PARM1Q6UWI2 310 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 OLFML1Q6UWY5 402 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 SLC26A9Q7LBE3 791 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 DDX42Q86XP3 938 aaKnown RBP eCLIP21.75■■□□□ 1.07
CD44-222ENST00000526025 ARL14EPQ8N8R7 260 aaPredicted RBP21.75■■□□□ 1.07
CD44-222ENST00000526025 DEPDC1BQ8WUY9 529 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 USP13Q92995 863 aaPredicted RBP21.75■■□□□ 1.07
CD44-222ENST00000526025 VCPIP1Q96JH7 1222 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 SLC22A12Q96S37 553 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 UHRF1Q96T88 793 aaPredicted RBP21.75■■□□□ 1.07
CD44-222ENST00000526025 CCSER2Q9H7U1 834 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 GRPEL1Q9HAV7 217 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 KCNK12Q9HB15 430 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 WDR35Q9P2L0 1181 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 LIMD1Q9UGP4 676 aa21.75■■□□□ 1.07
CD44-222ENST00000526025 SSU72P8A0A1W2PR75 194 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 PIK3R2O00459 728 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 HSF2BPO75031 334 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 PRAMEF12O95522 483 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 SKILP12757 684 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 ATP5C1P36542 298 aaKnown RBP21.74■■□□□ 1.07
CD44-222ENST00000526025 SLC6A3Q01959 620 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 C1QBPQ07021 282 aaKnown RBP21.74■■□□□ 1.07
CD44-222ENST00000526025 MAPK8IP2Q13387 824 aaPredicted RBP21.74■■□□□ 1.07
CD44-222ENST00000526025 ACAD10Q6JQN1 1059 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 MSANTD2Q6P1R3 559 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 FAM183BPQ6ZVS7 135 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 TC2NQ8N9U0 490 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 CLEC4CQ8WTT0 213 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 NDRG1Q92597 394 aaKnown RBP21.74■■□□□ 1.07
CD44-222ENST00000526025 FGF14Q92915 247 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 RNF38Q9H0F5 515 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 ARHGAP20Q9P2F6 1191 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 TJP2Q9UDY2 1190 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 DNMT3LQ9UJW3 386 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 NUMBLQ9Y6R0 609 aa21.74■■□□□ 1.07
CD44-222ENST00000526025 DDX3XO00571 662 aaKnown RBP eCLIP21.73■■□□□ 1.07
CD44-222ENST00000526025 CALB1P05937 261 aa21.73■■□□□ 1.07
CD44-222ENST00000526025 ADKP55263 362 aaKnown RBP21.73■■□□□ 1.07
CD44-222ENST00000526025 YWHAZP63104 245 aaKnown RBP21.73■■□□□ 1.07
CD44-222ENST00000526025 PTP4A2Q12974 167 aa21.73■■□□□ 1.07
CD44-222ENST00000526025 USP4Q13107 963 aa21.73■■□□□ 1.07
CD44-222ENST00000526025 TANGO2Q6ICL3 276 aa21.73■■□□□ 1.07
CD44-222ENST00000526025 OR6B2Q6IFH4 312 aa21.73■■□□□ 1.07
CD44-222ENST00000526025 MON1BQ7L1V2 547 aa21.73■■□□□ 1.07
CD44-222ENST00000526025 ARCQ7LC44 396 aa21.73■■□□□ 1.07
CD44-222ENST00000526025 XYLT1Q86Y38 959 aa21.73■■□□□ 1.07
CD44-222ENST00000526025 CYP2S1Q96SQ9 504 aa21.73■■□□□ 1.07
CD44-222ENST00000526025 POPDC2Q9HBU9 364 aa21.73■■□□□ 1.07
CD44-222ENST00000526025 BDP1A6H8Y1 2624 aa21.73■■□□□ 1.07
CD44-222ENST00000526025 DPYSL4O14531 572 aa21.72■■□□□ 1.07
CD44-222ENST00000526025 MBL2P11226 248 aaPredicted RBP21.72■■□□□ 1.07
CD44-222ENST00000526025 FCHO2Q0JRZ9 810 aa21.72■■□□□ 1.07
CD44-222ENST00000526025 C10orf120Q5SQS8 335 aa21.72■■□□□ 1.07
CD44-222ENST00000526025 MMS22LQ6ZRQ5 1243 aa21.72■■□□□ 1.07
CD44-222ENST00000526025 HFE2Q6ZVN8 426 aa21.72■■□□□ 1.07
CD44-222ENST00000526025 RSRC2Q7L4I2 434 aaKnown RBP21.72■■□□□ 1.07
CD44-222ENST00000526025 RNF135Q8IUD6 432 aa21.72■■□□□ 1.07
CD44-222ENST00000526025 MFSD6LQ8IWD5 586 aa21.72■■□□□ 1.07
CD44-222ENST00000526025 RNF139Q8WU17 664 aa21.72■■□□□ 1.07
CD44-222ENST00000526025 ZFRQ96KR1 1074 aaKnown RBP21.72■■□□□ 1.07
CD44-222ENST00000526025 SLC2A13Q96QE2 648 aa21.72■■□□□ 1.07
CD44-222ENST00000526025 PANX2Q96RD6 677 aa21.72■■□□□ 1.07
CD44-222ENST00000526025 NACA2Q9H009 215 aa21.72■■□□□ 1.07
CD44-222ENST00000526025 ADAM22Q9P0K1 906 aa21.72■■□□□ 1.07
CD44-222ENST00000526025 HEPACAM2A8MVW5 462 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 RTN2O75298 545 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 FYNP06241 537 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 PSMC3P17980 439 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 VIPR2P41587 438 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 TDGQ13569 410 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 ZNF77Q15935 545 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 VITQ6UXI7 678 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 BPIFB1Q8TDL5 484 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 FAM149B1Q96BN6 582 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 RSPRY1Q96DX4 576 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 PIWIL1Q96J94 861 aaKnown RBP21.71■■□□□ 1.07
CD44-222ENST00000526025 KXD1Q9BQD3 176 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 C11orf70Q9BRQ4 267 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 ISCUQ9H1K1 167 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 TMEM51Q9NW97 253 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 ADAMTS1Q9UHI8 967 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 SORCS3Q9UPU3 1222 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 CCL26Q9Y258 94 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 CPQQ9Y646 472 aa21.71■■□□□ 1.07
CD44-222ENST00000526025 GOLGA6L6A8MZA4 724 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 DAB1O75553 588 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 PLEKP08567 350 aaPredicted RBP21.7■■□□□ 1.06
CD44-222ENST00000526025 FECHP22830 423 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms