RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 OCM2P0CE71 109 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 OCMP0CE72 109 aaPredicted RBP8.69□□□□□ -1.02
CSMD1-213ENST00000523488 SRGAP2CP0DJJ0 459 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 ACVR2AP27037 513 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 RFC4P35249 363 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 GABPAQ06546 454 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 NCOA4Q13772 614 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 PACRGLQ8N7B6 248 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 GOLM1Q8NBJ4 401 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 SHKBP1Q8TBC3 707 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 SLC20A1Q8WUM9 679 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 KLF6Q99612 283 aaPredicted RBP8.69□□□□□ -1.02
CSMD1-213ENST00000523488 REEP2Q9BRK0 252 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 WWP1Q9H0M0 922 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 GLT8D2Q9H1C3 349 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 TPK1Q9H3S4 243 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 FAM96AQ9H5X1 160 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 SLC17A7Q9P2U7 560 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 HEY1Q9Y5J3 304 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 TEX264Q9Y6I9 313 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 FOXN3O00409 490 aaPredicted RBP8.68□□□□□ -1.02
CSMD1-213ENST00000523488 CLIC2O15247 247 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 XPOTO43592 962 aaKnown RBP8.68□□□□□ -1.02
CSMD1-213ENST00000523488 GLDCP23378 1020 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 ALDH1A3P47895 512 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 HARS2P49590 506 aaKnown RBP8.68□□□□□ -1.02
CSMD1-213ENST00000523488 HK2P52789 917 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 DYNLL1P63167 89 aaKnown RBP8.68□□□□□ -1.02
CSMD1-213ENST00000523488 FRG1Q14331 258 aaKnown RBP8.68□□□□□ -1.02
CSMD1-213ENST00000523488 CYTH1Q15438 398 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 SLC10A5Q5PT55 438 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 PLEKHA7Q6IQ23 1121 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 C16orf87Q6PH81 154 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 PRPF39Q86UA1 669 aaKnown RBP8.68□□□□□ -1.02
CSMD1-213ENST00000523488 HELQQ8TDG4 1101 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 SCINQ9Y6U3 715 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 FAM47E-STBD1D6RA91 191 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 KRT38O76015 456 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 PROSCO94903 275 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 GLRA2P23416 452 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 TTKP33981 857 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 PCYT1AP49585 367 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 BCAMP50895 628 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 ZNF200P98182 395 aaPredicted RBP8.68□□□□□ -1.02
CSMD1-213ENST00000523488 ZNF484Q5JVG2 852 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 METTL21CQ5VZV1 264 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 PPP1R2P3Q6NXS1 205 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 C3orf67Q6ZVT6 689 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 NEK10Q6ZWH5 1172 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 SLFN12Q8IYM2 578 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 LILRA2Q8N149 483 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 GSTCDQ8NEC7 633 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 DDHD1Q8NEL9 900 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 FBXL18Q96ME1 805 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 SLC4A9Q96Q91 983 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 BCL7BQ9BQE9 202 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 MCMBPQ9BTE3 642 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 PAIP1Q9H074 479 aaKnown RBP8.68□□□□□ -1.02
CSMD1-213ENST00000523488 DEFB129Q9H1M3 183 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 GPN2Q9H9Y4 310 aaPredicted RBP8.68□□□□□ -1.02
CSMD1-213ENST00000523488 C2orf71A6NGG8 1288 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 TMEM114B3SHH9 223 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 MCF2LO15068 1137 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 ACOX3O15254 700 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 SPTLC1O15269 473 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 SNAP91O60641 907 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 RFPL1O75677 317 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 KCNA4P22459 653 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 TNNI2P48788 182 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 ALDH18A1P54886 795 aaKnown RBP8.68□□□□□ -1.02
CSMD1-213ENST00000523488 ASPRV1Q53RT3 343 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 ZNF746Q6NUN9 644 aaPredicted RBP8.68□□□□□ -1.02
CSMD1-213ENST00000523488 SMIM5Q71RC9 77 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 CPNE8Q86YQ8 564 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 SYNE4Q8N205 404 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 KREMEN1Q96MU8 473 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 HAUS8Q9BT25 410 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 YTHDF1Q9BYJ9 559 aaKnown RBP8.68□□□□□ -1.02
CSMD1-213ENST00000523488 C8orf4Q9NR00 106 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 NIP7Q9Y221 180 aaKnown RBP eCLIP8.68□□□□□ -1.02
CSMD1-213ENST00000523488 COQ6Q9Y2Z9 468 aa8.68□□□□□ -1.02
CSMD1-213ENST00000523488 ZC3H11AO75152 810 aaKnown RBP eCLIP8.67□□□□□ -1.02
CSMD1-213ENST00000523488 H6PDO95479 791 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 ERBB2P04626 1255 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 C6orf222P0C671 652 aaPredicted RBP8.67□□□□□ -1.02
CSMD1-213ENST00000523488 CRHR1P34998 444 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 GJC1P36383 396 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 CDKL1Q00532 357 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 TFAP4Q01664 338 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 BFSP1Q12934 665 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 POTEAQ6S8J7 498 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 USP51Q70EK9 711 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 LPCAT2Q7L5N7 544 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 ALYREFQ86V81 257 aaKnown RBP8.67□□□□□ -1.02
CSMD1-213ENST00000523488 HSPH1Q92598 858 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 GJA10Q969M2 543 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 TRIM11Q96F44 468 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 FAM84BQ96KN1 310 aaPredicted RBP8.67□□□□□ -1.02
CSMD1-213ENST00000523488 HSD17B14Q9BPX1 270 aa8.67□□□□□ -1.02
CSMD1-213ENST00000523488 NUF2Q9BZD4 464 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms