RNA–Protein interactions for RNA: ENST00000512229.6

PCDHA4-202, Transcript of protocadherin alpha 4, humanhuman

TSL 1 (best) BASIC

Gene PCDHA4, Length 4,163 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4-202ENST00000512229 C12orf29Q8N999 325 aa13.57□□□□□ -0.24
PCDHA4-202ENST00000512229 ZBTB10Q96DT7 871 aa13.57□□□□□ -0.24
PCDHA4-202ENST00000512229 SERPINI1Q99574 410 aa13.57□□□□□ -0.24
PCDHA4-202ENST00000512229 FBXO44Q9H4M3 255 aa13.57□□□□□ -0.24
PCDHA4-202ENST00000512229 AAASQ9NRG9 546 aa13.57□□□□□ -0.24
PCDHA4-202ENST00000512229 ARHGEF38Q9NXL2 777 aa13.57□□□□□ -0.24
PCDHA4-202ENST00000512229 PCYOX1Q9UHG3 505 aa13.57□□□□□ -0.24
PCDHA4-202ENST00000512229 TRIM33Q9UPN9 1127 aa13.57□□□□□ -0.24
PCDHA4-202ENST00000512229 COQ4Q9Y3A0 265 aa13.57□□□□□ -0.24
PCDHA4-202ENST00000512229 C4BP0C0L5 1744 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 LTFP02788 710 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 MSL3Q8N5Y2 521 aaKnown RBP13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 NSMCE4AQ9NXX6 385 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 AAR2Q9Y312 384 aaKnown RBP13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 SLC12A8A0AV02 714 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 NOS2P35228 1153 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 DNAJC3Q13217 504 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 NBPF20Q3BBV1 942 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 EFHBQ8N7U6 833 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 TSEN2Q8NCE0 465 aaKnown RBP13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 ZSWIM2Q8NEG5 633 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 AGR3Q8TD06 166 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 LRRC15Q8TF66 581 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 POPDC2Q9HBU9 364 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 ZNF446Q9NWS9 450 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 SH3BP1Q9Y3L3 701 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 NPR3P17342 541 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 DRG2P55039 364 aaKnown RBP13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 SP2Q02086 613 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 COLGALT1Q8NBJ5 622 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 B3GALNT2Q8NCR0 500 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 PGLYRP2Q96PD5 576 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 NPHS2Q9NP85 383 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 SAE1Q9UBE0 346 aaPredicted RBP13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 SLC24A2Q9UI40 661 aa13.56□□□□□ -0.24
PCDHA4-202ENST00000512229 CASP2P42575 452 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 NR2C2P49116 596 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 GEMP55040 296 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 TWF1Q12792 350 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 PTK6Q13882 451 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 KCNT2Q6UVM3 1135 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 LRRC19Q9H756 370 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 LRRC40Q9H9A6 602 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 FAM105AQ9NUU6 356 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 TRPM5Q9NZQ8 1165 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 FSCN2O14926 492 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 DAB2IPQ5VWQ8 1189 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 C1orf127Q8N9H9 656 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 UPF1Q92900 1129 aaKnown RBP eCLIP13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 PPWD1Q96BP3 646 aaKnown RBP13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 APOL2Q9BQE5 337 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 RNF208Q9H0X6 261 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 NAALADL1Q9UQQ1 740 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 NHSL1Q5SYE7 1610 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 IRS2Q9Y4H2 1338 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 TBKBP1A7MCY6 615 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 F5H5T6 163 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 TREHO43280 583 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 NDUFS3O75489 264 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 SMPD1P17405 629 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 ZNF844Q08AG5 666 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 ZNF177Q13360 481 aaPredicted RBP13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 MYCBPAPQ8TBZ2 947 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 GANCQ8TET4 914 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 BRI3BPQ8WY22 251 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 WNT8BQ93098 351 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 TSPAN17Q96FV3 270 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 PAFAH2Q99487 392 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 TASP1Q9H6P5 420 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 TXNRD2Q9NNW7 524 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 MARCOQ9UEW3 520 aaPredicted RBP13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 SUN2Q9UH99 717 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 SLC30A1Q9Y6M5 507 aa13.55□□□□□ -0.24
PCDHA4-202ENST00000512229 MYH13Q9UKX3 1938 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 TMEM191CA6NGB0 347 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 KCNK1O00180 336 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 USP17L7P0C7H9 530 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 KIF19Q2TAC6 998 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 TIGD7Q6NT04 549 aaPredicted RBP13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 LLGL2Q6P1M3 1020 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 FAM183BPQ6ZVS7 135 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 HTR3CQ8WXA8 447 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 SIX2Q9NPC8 291 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 BAG5Q9UL15 447 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 SLC39A10Q9ULF5 831 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 MYH3P11055 1940 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 SMIM24O75264 130 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 URODP06132 367 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 ZSCAN5DPP0CG00 497 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 MYBL2P10244 700 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 CD52P31358 61 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 POLNQ7Z5Q5 900 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 SLC26A11Q86WA9 606 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 LHX5Q9H2C1 402 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 ABCF3Q9NUQ8 709 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 NDFIP2Q9NV92 336 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 ATP11BQ9Y2G3 1177 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 SMIM28A0A1B0GU29 152 aa13.54□□□□□ -0.24
PCDHA4-202ENST00000512229 DUSP11O75319 330 aaKnown RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms