RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 MRPL45Q9BRJ2 306 aaKnown RBP8.51□□□□□ -1.05
SCN1A-207ENST00000507401 TTLL2Q9BWV7 592 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 ZFAND3Q9H8U3 227 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 MED4Q9NPJ6 270 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 GKN1Q9NS71 199 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 GTSE1Q9NYZ3 720 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 NXF1Q9UBU9 619 aaKnown RBP8.51□□□□□ -1.05
SCN1A-207ENST00000507401 MAGED2Q9UNF1 606 aaPredicted RBP8.51□□□□□ -1.05
SCN1A-207ENST00000507401 RRP15Q9Y3B9 282 aaKnown RBP8.51□□□□□ -1.05
SCN1A-207ENST00000507401 PCDHGA2Q9Y5H1 932 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 COL4A2P08572 1712 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 NCANO14594 1321 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 FANCMQ8IYD8 2048 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 VPS13AQ96RL7 3174 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 TICRRQ7Z2Z1 1910 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 TRAV19A0A0A6YYK7 116 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 SPECC1L-ADORA2AF8WAN1 911 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 AP5Z1O43299 807 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 HCRTO43612 131 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 TADA3O75528 432 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 SMC2O95347 1197 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 HDCP19113 662 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 ANXA13P27216 316 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 PLA2G4AP47712 749 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 CASP4P49662 377 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 CCR3P51677 355 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 CDR1P51861 262 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 PSMC1P62191 440 aaKnown RBP8.5□□□□□ -1.05
SCN1A-207ENST00000507401 CCZ1BP86790 482 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 CCZ1P86791 482 aaPredicted RBP8.5□□□□□ -1.05
SCN1A-207ENST00000507401 CYP27A1Q02318 531 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 CSTF1Q05048 431 aaKnown RBP8.5□□□□□ -1.05
SCN1A-207ENST00000507401 FAM160A1Q05DH4 1040 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 MTAPQ13126 283 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 BIRC3Q13489 604 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 RUNX3Q13761 415 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 IQCB1Q15051 598 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 PDGFRLQ15198 375 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 SDHAF4Q5VUM1 108 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 MRPL14Q6P1L8 145 aaKnown RBP8.5□□□□□ -1.05
SCN1A-207ENST00000507401 CC2D1AQ6P1N0 951 aaPredicted RBP8.5□□□□□ -1.05
SCN1A-207ENST00000507401 INTS8Q75QN2 995 aaKnown RBP8.5□□□□□ -1.05
SCN1A-207ENST00000507401 SV2AQ7L0J3 742 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 UNC93AQ86WB7 457 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 SPATS2Q86XZ4 545 aaKnown RBP8.5□□□□□ -1.05
SCN1A-207ENST00000507401 ELOA2Q8IYF1 753 aaPredicted RBP8.5□□□□□ -1.05
SCN1A-207ENST00000507401 CRYBG2Q8N1P7 616 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 SPEM1Q8N4L4 309 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 B3GALNT2Q8NCR0 500 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 ATRIPQ8WXE1 791 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 ZNF592Q92610 1267 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 MYLPFQ96A32 169 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 FAXDC2Q96IV6 333 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 CHAMP1Q96JM3 812 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 ZFYVE19Q96K21 471 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 TNIP3Q96KP6 325 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 CYP2S1Q96SQ9 504 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 ELOVL4Q9GZR5 314 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 PRMT8Q9NR22 394 aaPredicted RBP8.5□□□□□ -1.05
SCN1A-207ENST00000507401 RMND1Q9NWS8 449 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 ZNF446Q9NWS9 450 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 COMMD8Q9NX08 183 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 ZSCAN32Q9NX65 697 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 TRPM5Q9NZQ8 1165 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 GCNT4Q9P109 453 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 NDRG2Q9UN36 371 aaKnown RBP8.5□□□□□ -1.05
SCN1A-207ENST00000507401 NME7Q9Y5B8 376 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 FAM186AA6NE01 2351 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 GREB1Q4ZG55 1949 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 ZNF638Q14966 1978 aaKnown RBP8.5□□□□□ -1.05
SCN1A-207ENST00000507401 PATJQ8NI35 1801 aa8.5□□□□□ -1.05
SCN1A-207ENST00000507401 OBSL1O75147 1896 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 PTPRDP23468 1912 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 TRDMT1O14717 391 aaKnown RBP8.49□□□□□ -1.05
SCN1A-207ENST00000507401 KINO60870 393 aaKnown RBP8.49□□□□□ -1.05
SCN1A-207ENST00000507401 LILRB5O75023 590 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 AKAP3O75969 853 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 RTN3O95197 1032 aaPredicted RBP8.49□□□□□ -1.05
SCN1A-207ENST00000507401 PAPSS2O95340 614 aaPredicted RBP8.49□□□□□ -1.05
SCN1A-207ENST00000507401 ZIC2O95409 532 aaPredicted RBP8.49□□□□□ -1.05
SCN1A-207ENST00000507401 VNN1O95497 513 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 ASS1P00966 412 aaKnown RBP8.49□□□□□ -1.05
SCN1A-207ENST00000507401 CCDC172P0C7W6 258 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 TRIM21P19474 475 aaKnown RBP8.49□□□□□ -1.05
SCN1A-207ENST00000507401 NR2F2P24468 414 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 HOXA6P31267 233 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 GTF2H1P32780 548 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 PSMC2P35998 433 aaKnown RBP8.49□□□□□ -1.05
SCN1A-207ENST00000507401 CXCL12P48061 93 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 VAMP7P51809 220 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 CDH8P55286 799 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 GSCP56915 257 aaPredicted RBP8.49□□□□□ -1.05
SCN1A-207ENST00000507401 DLG4P78352 724 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 ADAM9Q13443 819 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 CCINQ13939 588 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 ZNF699Q32M78 642 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 EDRF1Q3B7T1 1238 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 COBLL1Q53SF7 1204 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 MDH1BQ5I0G3 518 aa8.49□□□□□ -1.05
SCN1A-207ENST00000507401 C1orf220Q5T0J3 134 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms