RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 USP8P40818 1118 aa13.81□□□□□ -0.2
TCOF1-209ENST00000506630 VASPP50552 380 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-209ENST00000506630 ZNF132P52740 706 aa13.81□□□□□ -0.2
TCOF1-209ENST00000506630 PDE4CQ08493 712 aa13.81□□□□□ -0.2
TCOF1-209ENST00000506630 USP4Q13107 963 aa13.81□□□□□ -0.2
TCOF1-209ENST00000506630 ZNF77Q15935 545 aa13.81□□□□□ -0.2
TCOF1-209ENST00000506630 CSRP2Q16527 193 aa13.81□□□□□ -0.2
TCOF1-209ENST00000506630 PIGZQ86VD9 579 aa13.81□□□□□ -0.2
TCOF1-209ENST00000506630 ZNF687Q8N1G0 1237 aa13.81□□□□□ -0.2
TCOF1-209ENST00000506630 RIN3Q8TB24 985 aa13.81□□□□□ -0.2
TCOF1-209ENST00000506630 UBA3Q8TBC4 463 aa13.81□□□□□ -0.2
TCOF1-209ENST00000506630 CSGALNACT1Q8TDX6 532 aa13.81□□□□□ -0.2
TCOF1-209ENST00000506630 LSM14BQ9BX40 385 aaKnown RBP13.81□□□□□ -0.2
TCOF1-209ENST00000506630 TLR8Q9NR97 1041 aaKnown RBP13.81□□□□□ -0.2
TCOF1-209ENST00000506630 SCML2Q9UQR0 700 aa13.81□□□□□ -0.2
TCOF1-209ENST00000506630 TULP2O00295 520 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 XPO1O14980 1071 aaKnown RBP13.8□□□□□ -0.2
TCOF1-209ENST00000506630 LETM1O95202 739 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-209ENST00000506630 OLFM2O95897 454 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 CDK11BP21127 795 aaKnown RBP13.8□□□□□ -0.2
TCOF1-209ENST00000506630 CNR2P34972 360 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 KIF11P52732 1056 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 PLCB2Q00722 1185 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 MTF1Q14872 753 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 STILQ15468 1287 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 HECTD3Q5T447 861 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 CC2D1AQ6P1N0 951 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-209ENST00000506630 LCLAT1Q6UWP7 414 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 PRR23CQ6ZRP0 262 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-209ENST00000506630 TTC8Q8TAM2 541 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 SH3RF2Q8TEC5 729 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 TFAP2BQ92481 460 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 NACA2Q9H009 215 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 RNF38Q9H0F5 515 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 CCSER2Q9H7U1 834 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 SIX2Q9NPC8 291 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 SMPD4Q9NXE4 827 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 DNAJC12Q9UKB3 198 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 AJAP1Q9UKB5 411 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-209ENST00000506630 ARHGAP26Q9UNA1 814 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.8□□□□□ -0.2
TCOF1-209ENST00000506630 CPQQ9Y646 472 aa13.8□□□□□ -0.2
TCOF1-209ENST00000506630 A0A1W2PQH9 124 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 LEFTY2O00292 366 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 ARNTLO00327 626 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 TLR5O60602 858 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 ZDHHC11BP0C7U3 371 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 SETSIPP0DME0 302 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 GNA15P30679 374 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 TUBP50607 506 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 TKTL1P51854 596 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 COPB1P53618 953 aaKnown RBP13.79□□□□□ -0.2
TCOF1-209ENST00000506630 SLC7A9P82251 487 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 SATB1Q01826 763 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 TNK2Q07912 1038 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 KCNMA1Q12791 1236 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 LRRC32Q14392 662 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 NCAPHQ15003 741 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 CNGA2Q16280 664 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 FKBP15Q5T1M5 1219 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 SNX30Q5VWJ9 437 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 TRIM68Q6AZZ1 485 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 IL31Q6EBC2 164 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 C1orf228Q6PIY5 440 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 CCDC186Q7Z3E2 898 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 SPEM1Q8N4L4 309 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 BPIFA3Q9BQP9 254 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 ZSWIM1Q9BR11 485 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 UBXN6Q9BZV1 441 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 LRRC4Q9HBW1 653 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 GTSE1Q9NYZ3 720 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 NAGPAQ9UK23 515 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 CNTN6Q9UQ52 1028 aa13.79□□□□□ -0.2
TCOF1-209ENST00000506630 KIAA1549LQ6ZVL6 1849 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 SMTNL1A8MU46 457 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 BECN2A8MW95 431 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 CHURC1-FNTBB4DL54 471 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 COCHO43405 550 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 THAP12O43422 761 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 MED7O43513 233 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 CHRNB1P11230 501 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 PLA2G4AP47712 749 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 SOX9P48436 509 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 IFNAR2P48551 515 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 FNTBP49356 437 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 PGFP49763 221 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 RGS7P49802 495 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 KPNA1P52294 538 aaPredicted RBP13.78□□□□□ -0.2
TCOF1-209ENST00000506630 MLLT6P55198 1093 aaPredicted RBP13.78□□□□□ -0.2
TCOF1-209ENST00000506630 DMWDQ09019 674 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 ADIGQ0VDE8 80 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 RAPGEF1Q13905 1077 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 PKDCCQ504Y2 493 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 RAB41Q5JT25 222 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 LONP2Q86WA8 852 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 SIX6OS1Q8N1H7 587 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 SHC3Q92529 594 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 MSANTD3Q96H12 275 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 FUCA2Q9BTY2 467 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms