RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 RMDN1Q96DB5 314 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 SPON2Q9BUD6 331 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 BRD8Q9H0E9 1235 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 STXBP5LQ9Y2K9 1186 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 ADM5C9JUS6 153 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 AGPSO00116 658 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 PDHXO00330 501 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 TRUB2O95900 331 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 C4BPAP04003 597 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 ZSCAN5DPP0CG00 497 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 MAP3K7CLP57077 242 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 TAS2R40P59535 323 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 GNASQ5JWF2 1037 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 UNC93AQ86WB7 457 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 SUGP1Q8IWZ8 645 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 DDIASQ8IXT1 998 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 HTR3CQ8WXA8 447 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 SIKE1Q9BRV8 207 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 SLC8A2Q9UPR5 921 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 ANKRD36CQ5JPF3 1778 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 SNX3O60493 162 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 ATP5BP06576 529 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 NFICP08651 508 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 PGAM1P18669 254 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 ACO1P21399 889 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 RFC1P35251 1148 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 MGAT5Q09328 741 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 PTP4A2Q12974 167 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 PDAP1Q13442 181 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 RABGAP1LQ5R372 815 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 ZNF75CPQ92670 426 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 PABPC5Q96DU9 382 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 PPP1R36Q96LQ0 422 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 ILKAPQ9H0C8 392 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 CDT1Q9H211 546 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 FAF1Q9UNN5 650 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 MAGEB16A2A368 324 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 CCDC78A2IDD5 438 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 TRPC5OSA6NMA1 111 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 TKTL1P51854 596 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 RBBP7Q16576 425 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 PLEKHA7Q6IQ23 1121 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 MON1BQ7L1V2 547 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 PRUNE1Q86TP1 453 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 ZC3H3Q8IXZ2 948 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 TAGLN3Q9UI15 199 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 NOCTQ9UK39 431 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 LAMA4Q16363 1823 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 E2F8A0AVK6 867 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 KPNA6O60684 536 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 DDNO94850 711 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 THP07101 528 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 C9orf131Q5VYM1 1079 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 NIFKQ9BYG3 293 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 YIPF3Q9GZM5 350 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 ADGRA3Q8IWK6 1321 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 GRIN3BO60391 1043 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 CELF2O95319 508 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 ETS1P14921 441 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 RASA2Q15283 850 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 PCSK7Q16549 785 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 SCUBE3Q8IX30 993 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 PBXIP1Q96AQ6 731 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 UBE2OQ9C0C9 1292 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 LHX5Q9H2C1 402 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 ABHD16BQ9H3Z7 469 aa11.12□□□□□ -0.63
LIMCH1-205ENST00000503057 HADHAP40939 763 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 CPA2P48052 419 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 AQP5P55064 265 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 PCBP1Q15365 356 aaKnown RBP eCLIP11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 BBS12Q6ZW61 710 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 LRRC15Q8TF66 581 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 KLRG1Q96E93 195 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 ANKRD27Q96NW4 1050 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 C2CD2Q9Y426 696 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 DDX60Q8IY21 1712 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 TMEM191CA6NGB0 347 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 ANP32DO95626 131 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 MPOP05164 745 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 GFAPP14136 432 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 ICAM3P32942 547 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 MRPS35P82673 323 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 WASHC2DQ5SRD0 308 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 GRTP1Q5TC63 336 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 RNF43Q68DV7 783 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 LRRC8EQ6NSJ5 796 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 DCLRE1BQ9H816 532 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 MAFBQ9Y5Q3 323 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 RPA3P35244 121 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 RPL7AP62424 266 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 YWHAZP63104 245 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 FAM83EQ2M2I3 478 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 SPANXN3Q5MJ09 141 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 MFSD5Q6N075 450 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 EXOC3L1Q86VI1 746 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 PALB2Q86YC2 1186 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 CCDC33Q8N5R6 958 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 SLC25A41Q8N5S1 370 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 ATP6V0D2Q8N8Y2 350 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 SRPK1Q96SB4 655 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms