RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 APOPT1Q96IL0 206 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 SLC4A5Q9BY07 1137 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 VPS11Q9H270 941 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 MANSC1Q9H8J5 431 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 EBF2Q9HAK2 575 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 POPDC2Q9HBU9 364 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 CXorf49A8MYA2 514 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-204ENST00000501271 H3BRB1 525 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 C2CD2LO14523 706 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 DHRS4L1P0CG22 281 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 PYGBP11216 843 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 ADORA2AP29274 412 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 ATXN1P54253 815 aaKnown RBP10.25□□□□□ -0.77
CLIP1-204ENST00000501271 SLC18A2Q05940 514 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 STILQ15468 1287 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 GRIK4Q16099 956 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 TAF1BQ53T94 588 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-204ENST00000501271 PPP6R3Q5H9R7 873 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-204ENST00000501271 FYB2Q5VWT5 728 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 TMEM110Q86TL2 294 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 NT5DC4Q86YG4 428 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 TTC39CQ8N584 583 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 CCDC110Q8TBZ0 833 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 SLC35F5Q8WV83 523 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 USP6NLQ92738 828 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 FAM111AQ96PZ2 611 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 NCAPGQ9BPX3 1015 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 MAGEB5Q9BZ81 275 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 KATNBL1Q9H079 304 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 DPEP3Q9H4B8 488 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 FAM124BQ9H5Z6 455 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-204ENST00000501271 TUT1Q9H6E5 874 aaKnown RBP10.25□□□□□ -0.77
CLIP1-204ENST00000501271 YY1AP1Q9H869 796 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 RNF19AQ9NV58 838 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 ETNK2Q9NVF9 386 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 SNTG2Q9NY99 539 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 DCTN4Q9UJW0 460 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 GJD2Q9UKL4 321 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 IKBKGQ9Y6K9 419 aa10.25□□□□□ -0.77
CLIP1-204ENST00000501271 BCLAF3A2AJT9 711 aaKnown RBP10.24□□□□□ -0.77
CLIP1-204ENST00000501271 MDM4O15151 490 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 SPAG6O75602 509 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 ATP5HO75947 161 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 APRTP07741 180 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 TMEM62Q0P6H9 643 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 KIZQ2M2Z5 673 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 SLC45A4Q5BKX6 768 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 GLRA4Q5JXX5 417 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 MTDHQ86UE4 582 aaKnown RBP10.24□□□□□ -0.77
CLIP1-204ENST00000501271 SESTD1Q86VW0 696 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 LRRC6Q86X45 466 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 EMID1Q96A84 441 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-204ENST00000501271 C18orf25Q96B23 403 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-204ENST00000501271 RAB3IPQ96QF0 476 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-204ENST00000501271 TBCBQ99426 244 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 TRIM56Q9BRZ2 755 aaKnown RBP10.24□□□□□ -0.77
CLIP1-204ENST00000501271 ZNF670Q9BS34 389 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 VTA1Q9NP79 307 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 PNPLA8Q9NP80 782 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 ZFP69BQ9UJL9 534 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 GINS2Q9Y248 185 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 HES2Q9Y543 173 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 MYO18AQ92614 2054 aaKnown RBP10.24□□□□□ -0.77
CLIP1-204ENST00000501271 RBM47A0AV96 593 aaKnown RBP10.24□□□□□ -0.77
CLIP1-204ENST00000501271 CFAP69A5D8W1 941 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 ANP32DO95626 131 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 TROVE2P10155 538 aaKnown RBP eCLIP10.24□□□□□ -0.77
CLIP1-204ENST00000501271 CCND1P24385 295 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 CYP2F1P24903 491 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 HOXA11P31270 313 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-204ENST00000501271 GBE1Q04446 702 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 CBLBQ13191 982 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 CTC1Q2NKJ3 1217 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 PARP6Q2NL67 630 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 TLDC1Q6P9B6 456 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 CDHR3Q6ZTQ4 885 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 SLC26A11Q86WA9 606 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 CHSY1Q86X52 802 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 CTAGE3PQ8IX95 158 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 CCDC33Q8N5R6 958 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 PPM1NQ8N819 430 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 INPP5DQ92835 1189 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 TTC17Q96AE7 1141 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 SNX27Q96L92 541 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 TSSK1BQ9BXA7 367 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 EIF2AQ9BY44 585 aaKnown RBP10.24□□□□□ -0.77
CLIP1-204ENST00000501271 KLC2Q9H0B6 622 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 NRDE2Q9H7Z3 1164 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 SMYD2Q9NRG4 433 aa10.24□□□□□ -0.77
CLIP1-204ENST00000501271 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-204ENST00000501271 ZC3H7BQ9UGR2 993 aaKnown RBP10.24□□□□□ -0.77
CLIP1-204ENST00000501271 TRIM49D1C9J1S8 452 aa10.23□□□□□ -0.77
CLIP1-204ENST00000501271 UGT1A9O60656 530 aa10.23□□□□□ -0.77
CLIP1-204ENST00000501271 METTL18O95568 372 aa10.23□□□□□ -0.77
CLIP1-204ENST00000501271 SETSIPP0DME0 302 aa10.23□□□□□ -0.77
CLIP1-204ENST00000501271 BGNP21810 368 aa10.23□□□□□ -0.77
CLIP1-204ENST00000501271 MAGEA6P43360 314 aa10.23□□□□□ -0.77
CLIP1-204ENST00000501271 SLC10A2Q12908 348 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-204ENST00000501271 DCAF4L1Q3SXM0 396 aa10.23□□□□□ -0.77
CLIP1-204ENST00000501271 ZNF534Q76KX8 674 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms