RNA–Protein interactions for RNA: ENST00000498810.1

CDK11A-222, Transcript of cyclin dependent kinase 11A, human

TSL 2

Gene CDK11A, Length 574 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK11A-222	ENST00000498810	APOBEC3G	Q9HC16	384 aa	Known RBP	11.28	□□□□□ -0.6
CDK11A-222	ENST00000498810	GKN1	Q9NS71	199 aa		11.28	□□□□□ -0.6
CDK11A-222	ENST00000498810	DUS2	Q9NX74	493 aa	Known RBP	11.28	□□□□□ -0.6
CDK11A-222	ENST00000498810	SMPD4	Q9NXE4	827 aa		11.28	□□□□□ -0.6
CDK11A-222	ENST00000498810	MTF2	Q9Y483	593 aa	Predicted RBP	11.28	□□□□□ -0.6
CDK11A-222	ENST00000498810	NME7	Q9Y5B8	376 aa		11.28	□□□□□ -0.6
CDK11A-222	ENST00000498810	NFATC1	O95644	943 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	GNA14	O95837	355 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	CCDC192	P0DO97	292 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	CD19	P15391	556 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	PFKL	P17858	780 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	TBXAS1	P24557	533 aa	Predicted RBP	11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	CSTF1	Q05048	431 aa	Known RBP	11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	GOLGA8F	Q08AF8	430 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	GOLGA8DP	Q0D2H9	430 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	INCA1	Q0VD86	236 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	LRMP	Q12912	555 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	USP4	Q13107	963 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	RUNX3	Q13761	415 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	MORC3	Q14149	939 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	PON2	Q15165	354 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	TRIM68	Q6AZZ1	485 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	FRMD5	Q7Z6J6	570 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	DDX42	Q86XP3	938 aa	Known RBP eCLIP	11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	FUK	Q8N0W3	1084 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	C12orf29	Q8N999	325 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	ZSCAN1	Q8NBB4	408 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	OVCA2	Q8WZ82	227 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	NKD2	Q969F2	451 aa	Predicted RBP	11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	CYFIP2	Q96F07	1278 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	NT5C1B	Q96P26	610 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	CYP2S1	Q96SQ9	504 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	KCNK16	Q96T55	309 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	TTLL2	Q9BWV7	592 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	POLM	Q9NP87	494 aa	Predicted RBP	11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	TLR8	Q9NR97	1041 aa	Known RBP	11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	SH3BP1	Q9Y3L3	701 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	CPQ	Q9Y646	472 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	WNT6	Q9Y6F9	365 aa		11.27	□□□□□ -0.61
CDK11A-222	ENST00000498810	FANCM	Q8IYD8	2048 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	ATG2B	Q96BY7	2078 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	CILP	O75339	1184 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	IRF1	P10914	325 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	ARSA	P15289	507 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	RPS9	P46781	194 aa	Known RBP	11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	FMO5	P49326	533 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	CCR3	P51677	355 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	GRSF1	Q12849	480 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	ZNF77	Q15935	545 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	CBWD6	Q4V339	395 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	CBWD3	Q5JTY5	395 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	CBWD5	Q5RIA9	395 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	HECTD3	Q5T447	861 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	FILIP1	Q7Z7B0	1213 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	CRYBG2	Q8N1P7	616 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	OSCP1	Q8WVF1	389 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	ZNF592	Q92610	1267 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	SEMA4D	Q92854	862 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	TWNK	Q96RR1	684 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	SLC22A12	Q96S37	553 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	IER2	Q9BTL4	223 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	NUP62CL	Q9H1M0	184 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	LMAN1L	Q9HAT1	526 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	CISH	Q9NSE2	258 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	GMIP	Q9P107	970 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	HESX1	Q9UBX0	185 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	ARHGAP26	Q9UNA1	814 aa		11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
CDK11A-222	ENST00000498810	F5	P12259	2224 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	CACNA1I	Q9P0X4	2223 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	ZNF840P	A6NDX5	716 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	LEFTY2	O00292	366 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	ARNTL	O00327	626 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	SLC9A3R1	O14745	358 aa	Predicted RBP	11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	ACO1	P21399	889 aa	Known RBP	11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	MLLT6	P55198	1093 aa	Predicted RBP	11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	CUL2	Q13617	745 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	DGKK	Q5KSL6	1271 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	TTI2	Q6NXR4	508 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	ZC3H3	Q8IXZ2	948 aa	Known RBP	11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	PPM1K	Q8N3J5	372 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	SCAMP5	Q8TAC9	235 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	ATRIP	Q8WXE1	791 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	NANOS1	Q8WY41	292 aa	Known RBP	11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	SLC35C1	Q96A29	364 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	TMEM176A	Q96HP8	235 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	FAXDC2	Q96IV6	333 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	LRRC3B	Q96PB8	259 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	HNRNPAB	Q99729	332 aa	Known RBP	11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	SMO	Q99835	787 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	ARID3A	Q99856	593 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	SRRT	Q9BXP5	876 aa	Known RBP	11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	CHRD	Q9H2X0	955 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	TMEM30A	Q9NV96	361 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	COMMD8	Q9NX08	183 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	DLGAP2	Q9P1A6	1054 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	CFAP97	Q9P2B7	532 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810		R4GN57	208 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	KIAA1549L	Q6ZVL6	1849 aa		11.25	□□□□□ -0.61
CDK11A-222	ENST00000498810	PES1	O00541	588 aa	Known RBP	11.24	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms