RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 TCRBV21S2A2A0A5A6 115 aa23.33■■□□□ 1.33
HDDC3-203ENST00000494993 CALUO43852 315 aaPredicted RBP23.33■■□□□ 1.33
HDDC3-203ENST00000494993 FAM200BP0CF97 657 aa23.33■■□□□ 1.33
HDDC3-203ENST00000494993 CMA1P23946 247 aa23.33■■□□□ 1.33
HDDC3-203ENST00000494993 ADORA2BP29275 332 aa23.33■■□□□ 1.33
HDDC3-203ENST00000494993 HTR3DQ70Z44 454 aa23.33■■□□□ 1.33
HDDC3-203ENST00000494993 TRMT11Q7Z4G4 463 aaKnown RBP23.33■■□□□ 1.33
HDDC3-203ENST00000494993 FRMD1Q8N878 549 aa23.33■■□□□ 1.33
HDDC3-203ENST00000494993 ZNF513Q8N8E2 541 aaPredicted RBP23.33■■□□□ 1.33
HDDC3-203ENST00000494993 KCNV2Q8TDN2 545 aa23.33■■□□□ 1.33
HDDC3-203ENST00000494993 KLF16Q9BXK1 252 aaPredicted RBP23.33■■□□□ 1.33
HDDC3-203ENST00000494993 TMEM9BQ9NQ34 198 aa23.33■■□□□ 1.33
HDDC3-203ENST00000494993 TRAF3IP3Q9Y228 551 aa23.33■■□□□ 1.33
HDDC3-203ENST00000494993 HPSEQ9Y251 543 aa23.33■■□□□ 1.33
HDDC3-203ENST00000494993 MAPK13O15264 365 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 MAP3K13O43283 966 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 GREM1O60565 184 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 TBX18O95935 607 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 TRIM21P19474 475 aaKnown RBP23.32■■□□□ 1.32
HDDC3-203ENST00000494993 NOVA1P51513 510 aaKnown RBP23.32■■□□□ 1.32
HDDC3-203ENST00000494993 VAMP7P51809 220 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 INCA1Q0VD86 236 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 BYSLQ13895 437 aaKnown RBP23.32■■□□□ 1.32
HDDC3-203ENST00000494993 MAP7D1Q3KQU3 841 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 C10orf76Q5T2E6 689 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 CLEC20AQ6ZU45 233 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 NUDT18Q6ZVK8 323 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 GPRIN1Q7Z2K8 1008 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 PGBD3Q8N328 593 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 SPRYD3Q8NCJ5 442 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 TWNKQ96RR1 684 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 HNRNPABQ99729 332 aaKnown RBP23.32■■□□□ 1.32
HDDC3-203ENST00000494993 CYLDQ9NQC7 956 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 EVLQ9UI08 416 aaPredicted RBP23.32■■□□□ 1.32
HDDC3-203ENST00000494993 MBD1Q9UIS9 605 aaPredicted RBP23.32■■□□□ 1.32
HDDC3-203ENST00000494993 SCML2Q9UQR0 700 aa23.32■■□□□ 1.32
HDDC3-203ENST00000494993 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa23.31■■□□□ 1.32
HDDC3-203ENST00000494993 HHLA1C9JL84 531 aa23.31■■□□□ 1.32
HDDC3-203ENST00000494993 CDX4O14627 284 aaPredicted RBP23.31■■□□□ 1.32
HDDC3-203ENST00000494993 KIF20AO95235 890 aa23.31■■□□□ 1.32
HDDC3-203ENST00000494993 ATP5C1P36542 298 aaKnown RBP23.31■■□□□ 1.32
HDDC3-203ENST00000494993 IRX4P78413 519 aa23.31■■□□□ 1.32
HDDC3-203ENST00000494993 TMEFF1Q8IYR6 380 aa23.31■■□□□ 1.32
HDDC3-203ENST00000494993 IMPG2Q9BZV3 1241 aa23.31■■□□□ 1.32
HDDC3-203ENST00000494993 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.31■■□□□ 1.321e-56■■■■■ 327
HDDC3-203ENST00000494993 OSER1Q9NX31 292 aa23.31■■□□□ 1.32
HDDC3-203ENST00000494993 HCN2Q9UL51 889 aa23.31■■□□□ 1.32
HDDC3-203ENST00000494993 CEP295Q9C0D2 2601 aa23.31■■□□□ 1.32
HDDC3-203ENST00000494993 PCNX2A6NKB5 2137 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 GIPC1O14908 333 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 TRIM24O15164 1050 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 CYP26A1O43174 497 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 PTGER3P43115 390 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 GOLGA8FQ08AF8 430 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 GOLGA8DPQ0D2H9 430 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 NFIL3Q16649 462 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 SPDYCQ5MJ68 293 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 GRAMD4Q6IC98 578 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 ARMCX6Q7L4S7 300 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 JAKMIP2Q96AA8 810 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 CYFIP2Q96F07 1278 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 NT5C1AQ9BXI3 368 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 CYP3A43Q9HB55 503 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 APOBEC3GQ9HC16 384 aaKnown RBP23.3■■□□□ 1.32
HDDC3-203ENST00000494993 PNPLA8Q9NP80 782 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 DNAJC17Q9NVM6 304 aaKnown RBP23.3■■□□□ 1.32
HDDC3-203ENST00000494993 LSM7Q9UK45 103 aaKnown RBP23.3■■□□□ 1.32
HDDC3-203ENST00000494993 STARD13Q9Y3M8 1113 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 PCDHA5Q9Y5H7 936 aa23.3■■□□□ 1.32
HDDC3-203ENST00000494993 NEDD8-MDP1E9PL57 170 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 CACNG3O60359 315 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 RHOBTB3O94955 611 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 PRR29P0C7W0 189 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 TRIM49P0CI25 452 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 TRIM49CP0CI26 452 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 HOXB2P14652 356 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 ACO1P21399 889 aaKnown RBP23.29■■□□□ 1.32
HDDC3-203ENST00000494993 NR2F2P24468 414 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 TRIM61Q5EBN2 209 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 SH3PXD2AQ5TCZ1 1133 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 INTS8Q75QN2 995 aaKnown RBP23.29■■□□□ 1.32
HDDC3-203ENST00000494993 MIB1Q86YT6 1006 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 SYT12Q8IV01 421 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 TAS1R2Q8TE23 839 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 CCDC47Q96A33 483 aaKnown RBP23.29■■□□□ 1.32
HDDC3-203ENST00000494993 SPATA32Q96LK8 384 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 XPO6Q96QU8 1125 aaKnown RBP23.29■■□□□ 1.32
HDDC3-203ENST00000494993 BBS2Q9BXC9 721 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 NMUR1Q9HB89 426 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 MARK1Q9P0L2 795 aa23.29■■□□□ 1.32
HDDC3-203ENST00000494993 TYRP14679 529 aa23.28■■□□□ 1.32
HDDC3-203ENST00000494993 GABRG2P18507 467 aa23.28■■□□□ 1.32
HDDC3-203ENST00000494993 NTSR1P30989 418 aa23.28■■□□□ 1.32
HDDC3-203ENST00000494993 SYKP43405 635 aa23.28■■□□□ 1.32
HDDC3-203ENST00000494993 GCLMP48507 274 aa23.28■■□□□ 1.32
HDDC3-203ENST00000494993 PPP3CAQ08209 521 aa23.28■■□□□ 1.32
HDDC3-203ENST00000494993 LMAN2Q12907 356 aa23.28■■□□□ 1.32
HDDC3-203ENST00000494993 LYSMD4Q5XG99 296 aa23.28■■□□□ 1.32
HDDC3-203ENST00000494993 EGFLAMQ63HQ2 1017 aa23.28■■□□□ 1.32
HDDC3-203ENST00000494993 KLHDC10Q6PID8 442 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms