RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 CLHC1Q8NHS4 586 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 CAGE1Q8TC20 777 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 STARD8Q92502 1023 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 SLC9A6Q92581 669 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 STAMQ92783 540 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 WNT8BQ93098 351 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 ITPKCQ96DU7 683 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 C1GALT1C1Q96EU7 318 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 MVB12AQ96EY5 273 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 CGREF1Q99674 301 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 SUV39H2Q9H5I1 410 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 NOL6Q9H6R4 1146 aaKnown RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 MRPL44Q9H9J2 332 aaKnown RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 ERVK-5Q9HDB9 667 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 DCP1AQ9NPI6 582 aaPredicted RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 A1CFQ9NQ94 594 aaKnown RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 NUDT15Q9NV35 164 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 STK32BQ9NY57 414 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 TMOD2Q9NZR1 351 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 POLKQ9UBT6 870 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 PAIP2BQ9ULR5 123 aaKnown RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 SLC8A2Q9UPR5 921 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 RPH3AQ9Y2J0 694 aaPredicted RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 PCDHB6Q9Y5E3 794 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 TCRBV16S1A1N1A0A5B0 115 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 GSAPA4D1B5 854 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 LRRD1A4D1F6 860 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 GOLGA8JA6NMD2 632 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 GOLGA8TH3BQL2 631 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 MYO1CO00159 1063 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 O00370 1275 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 PDE2AO00408 941 aaPredicted RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 CD3EAPO15446 510 aaKnown RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 ARHGAP6O43182 974 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 HNRNPRO43390 633 aaKnown RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 VEGFDO43915 354 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 CCNT1O60563 726 aaKnown RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 CRTAPO75718 401 aaPredicted RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 CBR3O75828 277 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 TSPAN9O75954 239 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 CYP1A1P04798 512 aaPredicted RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 GLI1P08151 1106 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 ALOX5P09917 674 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 GOLGA8HP0CJ92 632 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 PNMA6AP0CW24 399 aaPredicted RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 MYF5P13349 255 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 CFL1P23528 166 aaKnown RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 IL32P24001 234 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 LTKP29376 864 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 EIF2DP41214 584 aaKnown RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 AGFG1P52594 562 aaKnown RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 PMP22Q01453 160 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 UBE3AQ05086 875 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 EPS8Q12929 822 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 DNAJC3Q13217 504 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 GPM6BQ13491 265 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 MPP2Q14168 576 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 USP10Q14694 798 aaKnown RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 RPS6KA2Q15349 733 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 CCDC142Q17RM4 750 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 LRRC23Q53EV4 343 aaPredicted RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 PPP1R26Q5T8A7 1209 aaPredicted RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 CYP4F22Q6NT55 531 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 OTOAQ7RTW8 1153 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 REC114Q7Z4M0 266 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 DDX53Q86TM3 631 aaKnown RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 VPS36Q86VN1 386 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 RIOX2Q8IUF8 465 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 CCDC105Q8IYK2 499 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 TAGAPQ8N103 731 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 CADM3Q8N126 398 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 SLC43A2Q8N370 569 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 SFRP1Q8N474 314 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 TDRD5Q8NAT2 981 aaKnown RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 TMEM145Q8NBT3 493 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 PIK3C3Q8NEB9 887 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 GPR150Q8NGU9 434 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 GIMAP7Q8NHV1 300 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 PIP4K2CQ8TBX8 421 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 KLHL6Q8WZ60 621 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 PGAP3Q96FM1 320 aaPredicted RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 SIPA1Q96FS4 1042 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 MASTLQ96GX5 879 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 GBP5Q96PP8 586 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 LMF1Q96S06 567 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 AGAP2Q99490 1192 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 ZKSCAN3Q9BRR0 538 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 HAUS8Q9BT25 410 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 AARSD1Q9BTE6 412 aaKnown RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 BTBD2Q9BX70 525 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 C1QTNF2Q9BXJ5 285 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 FRMD8P1Q9BZ68 369 aaPredicted RBP4.4□□□□□ -1.7
BRCA1-220ENST00000492859 GPR62Q9BZJ7 368 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 CEP44Q9C0F1 390 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 BTBD1Q9H0C5 482 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 ST6GALNAC4Q9H4F1 302 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 C11orf16Q9NQ32 467 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 GMIPQ9P107 970 aa4.4□□□□□ -1.7
BRCA1-220ENST00000492859 MORF4L1Q9UBU8 362 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms