RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 HPS3Q969F9 1004 aa14.8□□□□□ -0.04
VARS-227ENST00000489979 CCDC127Q96BQ5 260 aa14.8□□□□□ -0.04
VARS-227ENST00000489979 CGRRF1Q99675 332 aa14.8□□□□□ -0.04
VARS-227ENST00000489979 GABRG3Q99928 467 aa14.8□□□□□ -0.04
VARS-227ENST00000489979 FAM124BQ9H5Z6 455 aaPredicted RBP14.8□□□□□ -0.04
VARS-227ENST00000489979 CCDC86Q9H6F5 360 aaKnown RBP14.8□□□□□ -0.04
VARS-227ENST00000489979 KIAA1586Q9HCI6 787 aa14.8□□□□□ -0.04
VARS-227ENST00000489979 NXF1Q9UBU9 619 aaKnown RBP14.8□□□□□ -0.04
VARS-227ENST00000489979 SUSD2Q9UGT4 822 aa14.8□□□□□ -0.04
VARS-227ENST00000489979 MYH10P35580 1976 aa14.8□□□□□ -0.04
VARS-227ENST00000489979 APC2O95996 2303 aa14.8□□□□□ -0.04
VARS-227ENST00000489979 A0A087X0B3 334 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 PRRT4C9JH25 899 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 NEDD8-MDP1E9PL57 170 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 ATP8B3O60423 1300 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 ZDHHC11BP0C7U3 371 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 GNSP15586 552 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 PTPRBP23467 1997 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 HOXD13P35453 343 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 GRIK2Q13002 908 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 SNRNP35Q16560 246 aaKnown RBP14.79□□□□□ -0.04
VARS-227ENST00000489979 TOGARAM2Q6ZUX3 1019 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 STXBP4Q6ZWJ1 553 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 SCFD1Q8WVM8 642 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 MRGPRX1Q96LB2 322 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 XPO6Q96QU8 1125 aaKnown RBP14.79□□□□□ -0.04
VARS-227ENST00000489979 MED10Q9BTT4 135 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 BBS2Q9BXC9 721 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 TRIM9Q9C026 710 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 NACA2Q9H009 215 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 IL37Q9NZH6 218 aa14.79□□□□□ -0.04
VARS-227ENST00000489979 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.79□□□□□ -0.04
VARS-227ENST00000489979 IGSF10Q6WRI0 2623 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 VPS37CA5D8V6 355 aaPredicted RBP14.78□□□□□ -0.04
VARS-227ENST00000489979 CACNG3O60359 315 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 TYRP14679 529 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 PGFP49763 221 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 CDH8P55286 799 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 MYL6P60660 151 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 CEBPZQ03701 1054 aaKnown RBP14.78□□□□□ -0.04
VARS-227ENST00000489979 TRPC3Q13507 836 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 PSMD6Q15008 389 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 C8orf34Q49A92 452 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 WDR45BQ5MNZ6 344 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 KIAA1324Q6UXG2 1013 aaKnown RBP14.78□□□□□ -0.04
VARS-227ENST00000489979 TPGS1Q6ZTW0 290 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 PAQR9Q6ZVX9 377 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 HTR3DQ70Z44 454 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 SLCO6A1Q86UG4 719 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 FAM35AQ86V20 835 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 MDM1Q8TC05 714 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 FOXJ1Q92949 421 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 DMAP1Q9NPF5 467 aaPredicted RBP14.78□□□□□ -0.04
VARS-227ENST00000489979 CACNA2D2Q9NY47 1150 aa14.78□□□□□ -0.04
VARS-227ENST00000489979 APOBEC2Q9Y235 224 aaKnown RBP14.78□□□□□ -0.04
VARS-227ENST00000489979 FAM92AA1XBS5 289 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 WASH3PC4AMC7 463 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 CLIC2O15247 247 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 GREM1O60565 184 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 TLR5O60602 858 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 CBFA2T3O75081 653 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 STAU1O95793 577 aaKnown RBP14.77□□□□□ -0.05
VARS-227ENST00000489979 TBX18O95935 607 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 CYP24A1Q07973 514 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 PDILTQ8N807 584 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 HNRNPLLQ8WVV9 542 aaKnown RBP14.77□□□□□ -0.05
VARS-227ENST00000489979 ZNF516Q92618 1163 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 SMARCD1Q96GM5 515 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 KLF16Q9BXK1 252 aaPredicted RBP14.77□□□□□ -0.05
VARS-227ENST00000489979 ZDHHC5Q9C0B5 715 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 XYLT2Q9H1B5 865 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 SMYD3Q9H7B4 428 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 AGPAT3Q9NRZ7 376 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 COMMD8Q9NX08 183 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 MARK1Q9P0L2 795 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 WDR35Q9P2L0 1181 aa14.77□□□□□ -0.05
VARS-227ENST00000489979 URB1O60287 2271 aaKnown RBP14.76□□□□□ -0.05
VARS-227ENST00000489979 A0A1B0GTW7 788 aa14.76□□□□□ -0.05
VARS-227ENST00000489979 MEI4A8MW99 385 aa14.76□□□□□ -0.05
VARS-227ENST00000489979 TGFB1I1O43294 461 aa14.76□□□□□ -0.05
VARS-227ENST00000489979 AP1G2O75843 785 aa14.76□□□□□ -0.05
VARS-227ENST00000489979 CD6P30203 668 aa14.76□□□□□ -0.05
VARS-227ENST00000489979 ATICP31939 592 aa14.76□□□□□ -0.05
VARS-227ENST00000489979 CYP2J2P51589 502 aa14.76□□□□□ -0.05
VARS-227ENST00000489979 FAM173BQ6P4H8 233 aa14.76□□□□□ -0.05
VARS-227ENST00000489979 SETD7Q8WTS6 366 aaKnown RBP14.76□□□□□ -0.05
VARS-227ENST00000489979 DNASE2BQ8WZ79 361 aa14.76□□□□□ -0.05
VARS-227ENST00000489979 SYAP1Q96A49 352 aaPredicted RBP14.76□□□□□ -0.05
VARS-227ENST00000489979 TOE1Q96GM8 510 aaKnown RBP14.76□□□□□ -0.05
VARS-227ENST00000489979 GZF1Q9H116 711 aaPredicted RBP14.76□□□□□ -0.05
VARS-227ENST00000489979 KRT82Q9NSB4 513 aa14.76□□□□□ -0.05
VARS-227ENST00000489979 PCOLCE2Q9UKZ9 415 aa14.76□□□□□ -0.05
VARS-227ENST00000489979 RAXQ9Y2V3 346 aa14.76□□□□□ -0.05
VARS-227ENST00000489979 GOLGA4Q13439 2230 aaKnown RBP14.76□□□□□ -0.05
VARS-227ENST00000489979 GFRA2O00451 464 aa14.75□□□□□ -0.05
VARS-227ENST00000489979 EIF3DO15371 548 aaKnown RBP eCLIP14.75□□□□□ -0.05
VARS-227ENST00000489979 BEST1O76090 585 aa14.75□□□□□ -0.05
VARS-227ENST00000489979 CLSTN1O94985 981 aa14.75□□□□□ -0.05
VARS-227ENST00000489979 CISD3P0C7P0 127 aa14.75□□□□□ -0.05
VARS-227ENST00000489979 NCAM1P13591 858 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms