RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 VPS51Q9UID3 782 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 MID2Q9UJV3 735 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 TPCN1Q9ULQ1 816 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 NOB1Q9ULX3 412 aaKnown RBP3.75□□□□□ -1.81
CPSF3-205ENST00000489629 CAPN11Q9UMQ6 739 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 MYMKA6NI61 221 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 CLIC1O00299 241 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 RNF8O76064 485 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 SNHG28P0DPA3 235 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 BTF3P20290 206 aaKnown RBP3.74□□□□□ -1.81
CPSF3-205ENST00000489629 ID2Q02363 134 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 ZNF91Q05481 1191 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 SLC14A1Q13336 389 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 FHL3Q13643 280 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 MFSD13AQ14CX5 517 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 NFE2Q16621 373 aaPredicted RBP3.74□□□□□ -1.81
CPSF3-205ENST00000489629 NXNQ6DKJ4 435 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 VSTM1Q6UX27 236 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 UBE2Q1Q7Z7E8 422 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 TCEAL8Q8IYN2 117 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 FAM177A1Q8N128 213 aaPredicted RBP3.74□□□□□ -1.81
CPSF3-205ENST00000489629 MAGEB6Q8N7X4 407 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 PNPLA1Q8N8W4 532 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 APIPQ96GX9 242 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 ZNF668Q96K58 619 aaPredicted RBP3.74□□□□□ -1.81
CPSF3-205ENST00000489629 SELENOOQ9BVL4 669 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 FAM83DQ9H4H8 585 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 HEY2Q9UBP5 337 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 NKX1-2Q9UD57 310 aaPredicted RBP3.74□□□□□ -1.81
CPSF3-205ENST00000489629 DDX20Q9UHI6 824 aaKnown RBP3.74□□□□□ -1.81
CPSF3-205ENST00000489629 FZD4Q9ULV1 537 aa3.74□□□□□ -1.81
CPSF3-205ENST00000489629 FAM90A10PA6NDY2 464 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 AQP7P3A6NL99 342 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 RAB27BO00194 218 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 SCGB1D2O95969 90 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 CD19P15391 556 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 ZKSCAN1P17029 563 aaPredicted RBP3.73□□□□□ -1.81
CPSF3-205ENST00000489629 ADRA1DP25100 572 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 CCKBRP32239 447 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 CACNB3P54284 484 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 RPS13P62277 151 aaKnown RBP3.73□□□□□ -1.81
CPSF3-205ENST00000489629 GPC5P78333 572 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 ODR4Q5SWX8 454 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 RNF220Q5VTB9 566 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 PLAG1Q6DJT9 500 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 ANO7Q6IWH7 933 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 C11orf44Q8N8P7 122 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 NSMCE1Q8WV22 266 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 LRTOMTQ8WZ04 291 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 ZDHHC12Q96GR4 267 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 ZFYVE19Q96K21 471 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 MSLNLQ96KJ4 702 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 HS6ST2Q96MM7 605 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 KRTAP2-2Q9BYT5 123 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 FOXP1Q9H334 677 aaPredicted RBP3.73□□□□□ -1.81
CPSF3-205ENST00000489629 ZNF580Q9UK33 172 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 HDAC9Q9UKV0 1011 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 MAFFQ9ULX9 164 aa3.73□□□□□ -1.81
CPSF3-205ENST00000489629 TTC3P53804 2025 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 FYB1O15117 783 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 PRAMEF2O60811 474 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 MBPP02686 304 aaPredicted RBP3.72□□□□□ -1.81
CPSF3-205ENST00000489629 HRGP04196 525 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 CYP19A1P11511 503 aaPredicted RBP3.72□□□□□ -1.81
CPSF3-205ENST00000489629 TPH1P17752 444 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 NTSR1P30989 418 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 CCKARP32238 428 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 HTR7P34969 479 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 COPAP53621 1224 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 HSF1Q00613 529 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 STK3Q13188 491 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 KCNAB1Q14722 419 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 CLCA4Q14CN2 919 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 POLD3Q15054 466 aaPredicted RBP3.72□□□□□ -1.81
CPSF3-205ENST00000489629 ST3GAL2Q16842 350 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 PLEKHG6Q3KR16 790 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 KLHL22Q53GT1 634 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 MANEALQ5VSG8 457 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 GRHL2Q6ISB3 625 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 CHST15Q7LFX5 561 aaPredicted RBP3.72□□□□□ -1.81
CPSF3-205ENST00000489629 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.72□□□□□ -1.81
CPSF3-205ENST00000489629 YAF2Q8IY57 180 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 FAM156AQ8NDB6 213 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 ZNF548Q8NEK5 533 aaPredicted RBP3.72□□□□□ -1.81
CPSF3-205ENST00000489629 HIC2Q96JB3 615 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 HIST1H2AAQ96QV6 131 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 LRRC27Q9C0I9 530 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 FAM204AQ9H8W3 233 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 MLXIPLQ9NP71 852 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 STEAP1Q9UHE8 339 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 SLC27A6Q9Y2P4 619 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 COL15A1P39059 1388 aa3.72□□□□□ -1.81
CPSF3-205ENST00000489629 SPATA31A1Q5TZJ5 1347 aa3.71□□□□□ -1.81
CPSF3-205ENST00000489629 CD8B2A6NJW9 211 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 OAZ2O95190 189 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 ZBED1O96006 694 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 TOMM40O96008 361 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 FGF2P09038 288 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 TKTP29401 623 aaKnown RBP3.71□□□□□ -1.82
CPSF3-205ENST00000489629 CARSP49589 748 aaKnown RBP3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms