RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 INMTO95050 263 aa4.69□□□□□ -1.66
VPS41-213ENST00000485955 PARNO95453 639 aaKnown RBP4.69□□□□□ -1.66
VPS41-213ENST00000485955 RPL17P18621 184 aaKnown RBP4.69□□□□□ -1.66
VPS41-213ENST00000485955 COPAP53621 1224 aa4.69□□□□□ -1.66
VPS41-213ENST00000485955 LARS2Q15031 903 aaKnown RBP4.69□□□□□ -1.66
VPS41-213ENST00000485955 Q4G0T1 1027 aa4.69□□□□□ -1.66
VPS41-213ENST00000485955 MEX3CQ5U5Q3 659 aaKnown RBP4.69□□□□□ -1.66
VPS41-213ENST00000485955 KLHDC7AQ5VTJ3 777 aa4.69□□□□□ -1.66
VPS41-213ENST00000485955 GRHL2Q6ISB3 625 aa4.69□□□□□ -1.66
VPS41-213ENST00000485955 TMEM65Q6PI78 240 aa4.69□□□□□ -1.66
VPS41-213ENST00000485955 SMCR8Q8TEV9 937 aaPredicted RBP4.69□□□□□ -1.66
VPS41-213ENST00000485955 EDC3Q96F86 508 aaKnown RBP4.69□□□□□ -1.66
VPS41-213ENST00000485955 ZNF48Q96MX3 618 aaPredicted RBP4.69□□□□□ -1.66
VPS41-213ENST00000485955 UNKQ9C0B0 810 aaKnown RBP4.69□□□□□ -1.66
VPS41-213ENST00000485955 GAR1Q9NY12 217 aaKnown RBP4.69□□□□□ -1.66
VPS41-213ENST00000485955 ZNF521Q96K83 1311 aa4.69□□□□□ -1.66
VPS41-213ENST00000485955 RHPN2P1A8MT19 583 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 A8MVJ9 347 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 E5RJQ4 531 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 CLIC1O00299 241 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 PPM1GO15355 546 aaPredicted RBP4.68□□□□□ -1.66
VPS41-213ENST00000485955 SNX2O60749 519 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 PQBP1O60828 265 aaKnown RBP4.68□□□□□ -1.66
VPS41-213ENST00000485955 ANXA2P07355 339 aaKnown RBP4.68□□□□□ -1.66
VPS41-213ENST00000485955 CD19P15391 556 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 YY1P25490 414 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 HTR7P34969 479 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 GPC5P78333 572 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 CFHR3Q02985 330 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 SLC14A1Q13336 389 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 DAG1Q14118 895 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 ZNF268Q14587 947 aaPredicted RBP4.68□□□□□ -1.66
VPS41-213ENST00000485955 RANBP10Q6VN20 620 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 DCDC5Q6ZRR9 648 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 SDR16C5Q8N3Y7 309 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 C12orf76Q8N812 135 aaPredicted RBP4.68□□□□□ -1.66
VPS41-213ENST00000485955 Q8N9P0 234 aaPredicted RBP4.68□□□□□ -1.66
VPS41-213ENST00000485955 DENND1AQ8TEH3 1009 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 IPCEF1Q8WWN9 437 aaPredicted RBP4.68□□□□□ -1.66
VPS41-213ENST00000485955 ZDHHC12Q96GR4 267 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 ZNF668Q96K58 619 aaPredicted RBP4.68□□□□□ -1.66
VPS41-213ENST00000485955 FAM227BQ96M60 508 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 VPS16Q9H269 839 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 METTL14Q9HCE5 456 aaKnown RBP4.68□□□□□ -1.66
VPS41-213ENST00000485955 GJB4Q9NTQ9 266 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 STEAP1Q9UHE8 339 aa4.68□□□□□ -1.66
VPS41-213ENST00000485955 COL15A1P39059 1388 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 PPEF2O14830 753 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 KPNA5O15131 536 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 PRAMEF2O60811 474 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 IL18RAPO95256 599 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 SLC5A1P13866 664 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 PHKG2P15735 406 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 EIF4A1P60842 406 aaKnown RBP4.67□□□□□ -1.66
VPS41-213ENST00000485955 ZNF543Q08ER8 600 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 MTAPQ13126 283 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 MFSD13AQ14CX5 517 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 RABEP1Q15276 862 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 TRIP6Q15654 476 aaKnown RBP4.67□□□□□ -1.66
VPS41-213ENST00000485955 EPHA10Q5JZY3 1008 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 DENND2CQ68D51 928 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 LIX1LQ8IVB5 337 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 RNF152Q8N8N0 203 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 PNPLA1Q8N8W4 532 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 ATP11CQ8NB49 1132 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.67□□□□□ -1.66
VPS41-213ENST00000485955 MAP4K1Q92918 833 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 HS6ST2Q96MM7 605 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 USP29Q9HBJ7 922 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 ELOVL5Q9NYP7 299 aa4.67□□□□□ -1.66
VPS41-213ENST00000485955 DSCR3O14972 297 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 FYB1O15117 783 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 MBPP02686 304 aaPredicted RBP4.66□□□□□ -1.66
VPS41-213ENST00000485955 ADRA1DP25100 572 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 HOXD9P28356 352 aaPredicted RBP4.66□□□□□ -1.66
VPS41-213ENST00000485955 RBL1P28749 1068 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 ATICP31939 592 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 MMP13P45452 471 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 KCNB1Q14721 858 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 C4orf46Q504U0 113 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 TMTC4Q5T4D3 741 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 MZT2AQ6P582 158 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 SUN3Q8TAQ9 357 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 OSR1Q8TAX0 266 aaPredicted RBP4.66□□□□□ -1.66
VPS41-213ENST00000485955 IGFBPL1Q8WX77 278 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 TTC17Q96AE7 1141 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 IQCDQ96DY2 449 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 LRRC46Q96FV0 321 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 FAM118BQ9BPY3 351 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 SLC25A32Q9H2D1 315 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 PNPLA8Q9NP80 782 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 VPS45Q9NRW7 570 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 TUBA8Q9NY65 449 aaPredicted RBP4.66□□□□□ -1.66
VPS41-213ENST00000485955 CHPF2Q9P2E5 772 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 FZD4Q9ULV1 537 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 FAM50BQ9Y247 325 aa4.66□□□□□ -1.66
VPS41-213ENST00000485955 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.65□□□□□ -1.67
VPS41-213ENST00000485955 POM121BA6NF01 834 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 ADAM10O14672 748 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 AREL1O15033 823 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms