RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 ZNF699Q32M78 642 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 PEAR1Q5VY43 1037 aaPredicted RBP14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 GPRIN1Q7Z2K8 1008 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 TRMT11Q7Z4G4 463 aaKnown RBP14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 ACOT1Q86TX2 421 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 TMEM25Q86YD3 366 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 C12orf56Q8IXR9 622 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 KIAA0895Q8NCT3 520 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 SMOQ99835 787 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 MED10Q9BTT4 135 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.67□□□□□ -0.067e-12■■■■■ 31.5
SQSTM1-208ENST00000485412 IL37Q9NZH6 218 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 DMXL2Q8TDJ6 3036 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 A0A0A0MRY4 1105 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 E2F8A0AVK6 867 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 TBC1D3BA6NDS4 549 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 ZBTB24O43167 697 aaPredicted RBP14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 GREM1O60565 184 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 EXOC3O60645 756 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 PHACTR2O75167 634 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 TBX18O95935 607 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 C4BPAP04003 597 aaKnown RBP14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 ZDHHC11BP0C7U3 371 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 WASP42768 502 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 AMPD3Q01432 767 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 GAD2Q05329 585 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 BIRC3Q13489 604 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 PKP1Q13835 747 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 HNRNPDQ14103 355 aaKnown RBP14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 KNOP1Q1ED39 458 aaKnown RBP14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 PREPLQ4J6C6 727 aaPredicted RBP14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 BTBD8Q5XKL5 378 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 SPOPLQ6IQ16 392 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 MINDY1Q8N5J2 469 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 ZNF513Q8N8E2 541 aaPredicted RBP14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 C12orf29Q8N999 325 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 PARD3BQ8TEW8 1205 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 SYAP1Q96A49 352 aaPredicted RBP14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 P2RY11Q96G91 374 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 ZNF396Q96N95 335 aaPredicted RBP14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 LRRC27Q9C0I9 530 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 VRTNQ9H8Y1 702 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 CD93Q9NPY3 652 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 FAM49BQ9NUQ9 324 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 OSER1Q9NX31 292 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 TBC1D14Q9P2M4 693 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 PCDHA7Q9UN72 937 aa14.66□□□□□ -0.06
SQSTM1-208ENST00000485412 FAM92AA1XBS5 289 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 TAF4O00268 1085 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 TULP3O75386 442 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 AP1G2O75843 785 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 CLSTN1O94985 981 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 RTN3O95197 1032 aaPredicted RBP14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 SYPP08247 313 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 FAM163BP0C2L3 166 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 ATICP31939 592 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 FAM193AP78312 1265 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 CLDN10P78369 228 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 ZNF33AQ06730 810 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 STK4Q13043 487 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 NCOA4Q13772 614 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 ZNF667Q5HYK9 610 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 C1orf220Q5T0J3 134 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 HECTD3Q5T447 861 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 SNX30Q5VWJ9 437 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 RESP18Q5W5W9 173 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 NUDT18Q6ZVK8 323 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 PROSER1Q86XN7 944 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 TWNKQ96RR1 684 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 ACOX2Q99424 681 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 CAPN10Q9HC96 672 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 DMAP1Q9NPF5 467 aaPredicted RBP14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 CALCOCO1Q9P1Z2 691 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 SERTAD1Q9UHV2 236 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 PCDHB9Q9Y5E1 797 aa14.65□□□□□ -0.06
SQSTM1-208ENST00000485412 FAM221BA6H8Z2 402 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 ARHGAP33O14559 1287 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 MDM4O15151 490 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 HOXC11O43248 304 aaPredicted RBP14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 ACTN4O43707 911 aaKnown RBP14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 HOXB2P14652 356 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 GABRG2P18507 467 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 NDST1P52848 882 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 MAP3K7CLP57077 242 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 ANO4Q32M45 955 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 C10orf76Q5T2E6 689 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 EGFLAMQ63HQ2 1017 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 C19orf48Q6RUI8 117 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 TOGARAM2Q6ZUX3 1019 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 RAB44Q7Z6P3 723 aaPredicted RBP14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 TERB1Q8NA31 727 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 PDZD8Q8NEN9 1154 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 OR2I1PQ8NGU4 316 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 SLC2A14Q8TDB8 520 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 KCNV2Q8TDN2 545 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 OVCA2Q8WZ82 227 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 JAKMIP2Q96AA8 810 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 OTUB2Q96DC9 234 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 SMARCD1Q96GM5 515 aa14.64□□□□□ -0.07
SQSTM1-208ENST00000485412 CD248Q9HCU0 757 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms