RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 HTR7P34969 479 aa7.03□□□□□ -1.28
USP40-213ENST00000483216 HDAC1Q13547 482 aaPredicted RBP7.03□□□□□ -1.28
USP40-213ENST00000483216 PROSER3Q2NL68 480 aa7.03□□□□□ -1.28
USP40-213ENST00000483216 DGKKQ5KSL6 1271 aa7.03□□□□□ -1.28
USP40-213ENST00000483216 NGDNQ8NEJ9 315 aaKnown RBP7.03□□□□□ -1.28
USP40-213ENST00000483216 CIPCQ9C0C6 399 aa7.03□□□□□ -1.28
USP40-213ENST00000483216 SNX15Q9NRS6 342 aa7.03□□□□□ -1.28
USP40-213ENST00000483216 TFCP2L1Q9NZI6 479 aa7.03□□□□□ -1.28
USP40-213ENST00000483216 MGAT4CQ9UBM8 478 aa7.03□□□□□ -1.28
USP40-213ENST00000483216 SCRIBQ14160 1630 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 LINC01548A6NM66 108 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 OVOL3O00110 214 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 CCNT2O60583 730 aaKnown RBP7.02□□□□□ -1.29
USP40-213ENST00000483216 EXOC3O60645 756 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 PRKCGP05129 697 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 IFIT2P09913 472 aaKnown RBP7.02□□□□□ -1.29
USP40-213ENST00000483216 ARP10275 920 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 EGR1P18146 543 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 DIO1P49895 249 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 EIF4A1P60842 406 aaKnown RBP7.02□□□□□ -1.29
USP40-213ENST00000483216 BTKQ06187 659 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 LMAN2Q12907 356 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 SLC5A9Q2M3M2 681 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 EEF1AKMT2Q5JPI9 291 aaKnown RBP7.02□□□□□ -1.29
USP40-213ENST00000483216 TMEM63BQ5T3F8 832 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 ZNF575Q86XF7 245 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 CCDC28AQ8IWP9 274 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 SUN3Q8TAQ9 357 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 ABHD5Q8WTS1 349 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 ZNF566Q969W8 418 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 RGL1Q9NZL6 768 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 LPAR3Q9UBY5 353 aa7.02□□□□□ -1.29
USP40-213ENST00000483216 OR2W5A6NFC9 320 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 WIPF3A6NGB9 483 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 HNRNPDLO14979 420 aaKnown RBP7.01□□□□□ -1.29
USP40-213ENST00000483216 NDST3O95803 873 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 MST1P26927 711 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 MCM5P33992 734 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 GPS1Q13098 491 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 SYCP2LQ5T4T6 812 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 RAP1GAP2Q684P5 730 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 ABLIM2Q6H8Q1 611 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 BCDIN3DQ7Z5W3 292 aaKnown RBP7.01□□□□□ -1.29
USP40-213ENST00000483216 FSTL5Q8N475 847 aaPredicted RBP7.01□□□□□ -1.29
USP40-213ENST00000483216 GLIS1Q8NBF1 620 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 VPS50Q96JG6 964 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 WDR24Q96S15 920 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 MMS19Q96T76 1030 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 PCDHAC1Q9H158 963 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 TM7SF3Q9NS93 570 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 GAR1Q9NY12 217 aaKnown RBP7.01□□□□□ -1.29
USP40-213ENST00000483216 ZMYND8Q9ULU4 1186 aaPredicted RBP7.01□□□□□ -1.29
USP40-213ENST00000483216 CEP83Q9Y592 693 aa7.01□□□□□ -1.29
USP40-213ENST00000483216 FAM234BA2RU67 622 aa7□□□□□ -1.29
USP40-213ENST00000483216 MANSC4A6NHS7 340 aaPredicted RBP7□□□□□ -1.29
USP40-213ENST00000483216 WDR47O94967 919 aa7□□□□□ -1.29
USP40-213ENST00000483216 TMEM225BP0DP42 221 aa7□□□□□ -1.29
USP40-213ENST00000483216 ADRA1DP25100 572 aa7□□□□□ -1.29
USP40-213ENST00000483216 HSPA7P48741 367 aa7□□□□□ -1.29
USP40-213ENST00000483216 RENBPP51606 427 aa7□□□□□ -1.29
USP40-213ENST00000483216 TUBA4AP68366 448 aa7□□□□□ -1.29
USP40-213ENST00000483216 MTAPQ13126 283 aa7□□□□□ -1.29
USP40-213ENST00000483216 UBE4AQ14139 1066 aa7□□□□□ -1.29
USP40-213ENST00000483216 ACOX1Q15067 660 aa7□□□□□ -1.29
USP40-213ENST00000483216 MAPKAPK3Q16644 382 aa7□□□□□ -1.29
USP40-213ENST00000483216 MPEG1Q2M385 716 aa7□□□□□ -1.29
USP40-213ENST00000483216 C4orf46Q504U0 113 aa7□□□□□ -1.29
USP40-213ENST00000483216 PRAMEF17Q5VTA0 474 aa7□□□□□ -1.29
USP40-213ENST00000483216 LINC01465Q8N7H1 131 aa7□□□□□ -1.29
USP40-213ENST00000483216 PNPLA1Q8N8W4 532 aa7□□□□□ -1.29
USP40-213ENST00000483216 DPF1Q92782 380 aa7□□□□□ -1.29
USP40-213ENST00000483216 KIAA1191Q96A73 305 aa7□□□□□ -1.29
USP40-213ENST00000483216 CLSPNQ9HAW4 1339 aa7□□□□□ -1.29
USP40-213ENST00000483216 TCRBV5S1A1TA0A578 114 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 POC1B-GALNT4F8VUJ3 575 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 SMIM22K7EJ46 135 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 MASP2O00187 686 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 PLA2G6O60733 806 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 MT-CO3P00414 261 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 NHLRC4P0CG21 123 aaPredicted RBP6.99□□□□□ -1.29
USP40-213ENST00000483216 C21orf58P58505 322 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 DEUP1Q05D60 604 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 SLC10A2Q12908 348 aaPredicted RBP6.99□□□□□ -1.29
USP40-213ENST00000483216 ATP1A4Q13733 1029 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 GALNT4Q8N4A0 578 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.99□□□□□ -1.29
USP40-213ENST00000483216 ACRBPQ8NEB7 543 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 FYTTD1Q96QD9 318 aaKnown RBP6.99□□□□□ -1.29
USP40-213ENST00000483216 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.99□□□□□ -1.29
USP40-213ENST00000483216 NECTIN3Q9NQS3 549 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 ASIC5Q9NY37 505 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 PCDHGB2Q9Y5G2 931 aa6.99□□□□□ -1.29
USP40-213ENST00000483216 TISP43B9A030 160 aa6.98□□□□□ -1.29
USP40-213ENST00000483216 BTBD19C9JJ37 291 aa6.98□□□□□ -1.29
USP40-213ENST00000483216 CBFA2T3O75081 653 aa6.98□□□□□ -1.29
USP40-213ENST00000483216 CHRM5P08912 532 aaPredicted RBP6.98□□□□□ -1.29
USP40-213ENST00000483216 APEHP13798 732 aaKnown RBP6.98□□□□□ -1.29
USP40-213ENST00000483216 HTR3AP46098 478 aa6.98□□□□□ -1.29
USP40-213ENST00000483216 TMEM119Q4V9L6 283 aa6.98□□□□□ -1.29
USP40-213ENST00000483216 GRHL2Q6ISB3 625 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms