RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 EML5Q05BV3 1969 aa14.3□□□□□ -0.12
CHD3-207ENST00000466233 KMT2BQ9UMN6 2715 aaPredicted RBP14.3□□□□□ -0.12
CHD3-207ENST00000466233 SDK1Q7Z5N4 2213 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 CACNA1BQ00975 2339 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 UPK3BL1B0FP48 263 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 HHLA1C9JL84 531 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 UPK3BL2E5RIL1 263 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 ZBTB24O43167 697 aaPredicted RBP14.29□□□□□ -0.12
CHD3-207ENST00000466233 ZNF217O75362 1048 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 BEST1O76090 585 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 HLA-DRAP01903 254 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 KRT13P13646 458 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 NTSR1P30989 418 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 TIE1P35590 1138 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 PSMC2P35998 433 aaKnown RBP14.29□□□□□ -0.12
CHD3-207ENST00000466233 PIK3CAP42336 1068 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 SYKP43405 635 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 KIF11P52732 1056 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 IFRD2Q12894 506 aaPredicted RBP14.29□□□□□ -0.12
CHD3-207ENST00000466233 CCDC6Q16204 474 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 EDRF1Q3B7T1 1238 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 MAP7D1Q3KQU3 841 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 CEP135Q66GS9 1140 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 SLC23A3Q6PIS1 610 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 CLEC20AQ6ZU45 233 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 CCDC186Q7Z3E2 898 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 GRAMD1CQ8IYS0 662 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 ZNF513Q8N8E2 541 aaPredicted RBP14.29□□□□□ -0.12
CHD3-207ENST00000466233 CEP76Q8TAP6 659 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 CYFIP2Q96F07 1278 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 SPATA32Q96LK8 384 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 NIF3L1Q9GZT8 377 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 TMEM8AQ9HCN3 771 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 DNMT3LQ9UJW3 386 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 USP3Q9Y6I4 520 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 MYO16Q9Y6X6 1858 aa14.29□□□□□ -0.12
CHD3-207ENST00000466233 A0A1B0GVL5 298 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 CDX4O14627 284 aaPredicted RBP14.28□□□□□ -0.12
CHD3-207ENST00000466233 AP5Z1O43299 807 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 STX10O60499 249 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 CILPO75339 1184 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 CCDC130P13994 396 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 HNRNPLP14866 589 aaKnown RBP eCLIP14.28□□□□□ -0.12
CHD3-207ENST00000466233 NR2F2P24468 414 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 MAP3K7CLP57077 242 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 MESP2Q0VG99 397 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 DPYDQ12882 1025 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 PKP1Q13835 747 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 FOXD4L5Q5VV16 416 aaPredicted RBP14.28□□□□□ -0.12
CHD3-207ENST00000466233 KRT39Q6A163 491 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 SDE2Q6IQ49 451 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 SCARA5Q6ZMJ2 495 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 TMEM25Q86YD3 366 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 C12orf29Q8N999 325 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 FOXD4L4Q8WXT5 416 aaPredicted RBP14.28□□□□□ -0.12
CHD3-207ENST00000466233 ATG2BQ96BY7 2078 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 GABRG3Q99928 467 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 NUSAP1Q9BXS6 441 aaKnown RBP14.28□□□□□ -0.12
CHD3-207ENST00000466233 DUSP16Q9BY84 665 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 GTPBP4Q9BZE4 634 aaKnown RBP14.28□□□□□ -0.12
CHD3-207ENST00000466233 TPSD1Q9BZJ3 242 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.28□□□□□ -0.12
CHD3-207ENST00000466233 FBXO10Q9UK96 956 aa14.28□□□□□ -0.12
CHD3-207ENST00000466233 C4orf47A7E2U8 309 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 MAP3K13O43283 966 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 CLSTN1O94985 981 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 BCKDHBP21953 392 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 CHKAP35790 457 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 COG7P83436 770 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 ADAM9Q13443 819 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 ST3GAL2Q16842 350 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 ANO4Q32M45 955 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 FOXD4L6Q3SYB3 417 aaPredicted RBP14.27□□□□□ -0.13
CHD3-207ENST00000466233 ZCWPW2Q504Y3 356 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 C10orf76Q5T2E6 689 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 EMC10Q5UCC4 262 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 GRAMD4Q6IC98 578 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 TCEAL6Q6IPX3 200 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 FOXD4L3Q6VB84 417 aaPredicted RBP14.27□□□□□ -0.13
CHD3-207ENST00000466233 Q6ZNB5 142 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 METTL3Q86U44 580 aaKnown RBP14.27□□□□□ -0.13
CHD3-207ENST00000466233 FAM186BQ8IYM0 893 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 ARHGAP18Q8N392 663 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 TCEAL3Q969E4 200 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 CD248Q9HCU0 757 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 BCCIPQ9P287 314 aaKnown RBP eCLIP14.27□□□□□ -0.13
CHD3-207ENST00000466233 PILRBQ9UKJ0 227 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 SLC27A6Q9Y2P4 619 aa14.27□□□□□ -0.13
CHD3-207ENST00000466233 TCRBV21S2A2A0A5A6 115 aa14.26□□□□□ -0.13
CHD3-207ENST00000466233 RALAP11233 206 aa14.26□□□□□ -0.13
CHD3-207ENST00000466233 TYRP14679 529 aa14.26□□□□□ -0.13
CHD3-207ENST00000466233 ACO1P21399 889 aaKnown RBP14.26□□□□□ -0.13
CHD3-207ENST00000466233 DHPSP49366 369 aaPredicted RBP14.26□□□□□ -0.13
CHD3-207ENST00000466233 IRX4P78413 519 aa14.26□□□□□ -0.13
CHD3-207ENST00000466233 COBLL1Q53SF7 1204 aa14.26□□□□□ -0.13
CHD3-207ENST00000466233 LYSMD4Q5XG99 296 aa14.26□□□□□ -0.13
CHD3-207ENST00000466233 SFTPA1Q8IWL2 248 aa14.26□□□□□ -0.13
CHD3-207ENST00000466233 TAS1R2Q8TE23 839 aa14.26□□□□□ -0.13
CHD3-207ENST00000466233 BBS2Q9BXC9 721 aa14.26□□□□□ -0.13
CHD3-207ENST00000466233 DCLK3Q9C098 648 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms