RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 FOXQ1Q9C009 403 aa12.24□□□□□ -0.45
CUX1-207ENST00000465461 PDCL3Q9H2J4 239 aa12.24□□□□□ -0.45
CUX1-207ENST00000465461 MFSD1Q9H3U5 465 aa12.24□□□□□ -0.45
CUX1-207ENST00000465461 KIF9Q9HAQ2 790 aa12.24□□□□□ -0.45
CUX1-207ENST00000465461 CYLDQ9NQC7 956 aa12.24□□□□□ -0.45
CUX1-207ENST00000465461 HPS4Q9NQG7 708 aa12.24□□□□□ -0.45
CUX1-207ENST00000465461 CNGB3Q9NQW8 809 aa12.24□□□□□ -0.45
CUX1-207ENST00000465461 ARHGEF3Q9NR81 526 aa12.24□□□□□ -0.45
CUX1-207ENST00000465461 THG1LQ9NWX6 298 aaKnown RBP12.24□□□□□ -0.45
CUX1-207ENST00000465461 DUS2Q9NX74 493 aaKnown RBP12.24□□□□□ -0.45
CUX1-207ENST00000465461 SFMBT1Q9UHJ3 866 aa12.24□□□□□ -0.45
CUX1-207ENST00000465461 RASAL2Q9UJF2 1139 aa12.24□□□□□ -0.45
CUX1-207ENST00000465461 PCDHGC3Q9UN70 934 aa12.24□□□□□ -0.45
CUX1-207ENST00000465461 MTF2Q9Y483 593 aaPredicted RBP12.24□□□□□ -0.45
CUX1-207ENST00000465461 HELZP42694 1942 aaKnown RBP12.23□□□□□ -0.45
CUX1-207ENST00000465461 SHISA7A6NL88 538 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 PAPSS1O43252 624 aaPredicted RBP12.23□□□□□ -0.45
CUX1-207ENST00000465461 ERBB2P04626 1255 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 RALAP11233 206 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 CHRNB2P17787 502 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 PFKLP17858 780 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 RPL34P49207 117 aaKnown RBP12.23□□□□□ -0.45
CUX1-207ENST00000465461 TUBP50607 506 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 PDE6CP51160 858 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 KPNA1P52294 538 aaPredicted RBP12.23□□□□□ -0.45
CUX1-207ENST00000465461 VCPP55072 806 aaKnown RBP12.23□□□□□ -0.45
CUX1-207ENST00000465461 PFKPQ01813 784 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 PDCLQ13371 301 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 TAF5Q15542 800 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 MLF2Q15773 248 aaPredicted RBP12.23□□□□□ -0.45
CUX1-207ENST00000465461 CWF19L1Q69YN2 538 aaKnown RBP12.23□□□□□ -0.45
CUX1-207ENST00000465461 CSGALNACT1Q8TDX6 532 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 EPS8L1Q8TE68 723 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 CPA5Q8WXQ8 436 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 BAP1Q92560 729 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 PPP1R13BQ96KQ4 1090 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 XPO4Q9C0E2 1151 aaKnown RBP12.23□□□□□ -0.45
CUX1-207ENST00000465461 TBC1D17Q9HA65 648 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 NOCTQ9UK39 431 aaKnown RBP12.23□□□□□ -0.45
CUX1-207ENST00000465461 KIF26AQ9ULI4 1882 aaPredicted RBP12.23□□□□□ -0.45
CUX1-207ENST00000465461 BDP1A6H8Y1 2624 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 COL4A2P08572 1712 aa12.23□□□□□ -0.45
CUX1-207ENST00000465461 A0A1W2PQC6 194 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 LRRC53A6NM62 1247 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 PRR33A8MZF0 331 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 FYNP06241 537 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 PBX1P40424 430 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 IFNAR2P48551 515 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 PSEN1P49768 467 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 PLCB2Q00722 1185 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 FMO1Q01740 532 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 PTPN20Q4JDL3 420 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 NAIF1Q69YI7 327 aaPredicted RBP12.22□□□□□ -0.45
CUX1-207ENST00000465461 RSRC2Q7L4I2 434 aaKnown RBP12.22□□□□□ -0.45
CUX1-207ENST00000465461 PHLDB2Q86SQ0 1253 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 TMEM110Q86TL2 294 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 GAS2L3Q86XJ1 694 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 ARHGAP18Q8N392 663 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 OSCP1Q8WVF1 389 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 CPLX3Q8WVH0 158 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 DNASE1L2Q92874 299 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 PCDHB18PQ96TA0 734 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 RBSNQ9H1K0 784 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 LHX5Q9H2C1 402 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 CLIC5Q9NZA1 410 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 DNMT3LQ9UJW3 386 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 NAALADL1Q9UQQ1 740 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 SH3BP1Q9Y3L3 701 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 PIAS3Q9Y6X2 628 aa12.22□□□□□ -0.45
CUX1-207ENST00000465461 SLC12A8A0AV02 714 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 AP5Z1O43299 807 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 MSI1O43347 362 aaKnown RBP12.21□□□□□ -0.45
CUX1-207ENST00000465461 GREM1O60565 184 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 GRAP2O75791 330 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 LTFP02788 710 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 DCNP07585 359 aaKnown RBP12.21□□□□□ -0.45
CUX1-207ENST00000465461 TCF3P15923 654 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 ACADSBP45954 432 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 STARD6P59095 220 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 RUNX3Q13761 415 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 UBXN2BQ14CS0 331 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 MEA1Q16626 185 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 EML3Q32P44 896 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 SYPL2Q5VXT5 272 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 NAA35Q5VZE5 725 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 E4F1Q66K89 784 aaPredicted RBP12.21□□□□□ -0.45
CUX1-207ENST00000465461 OR6B2Q6IFH4 312 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 TXNDC11Q6PKC3 985 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 FAM183BPQ6ZVS7 135 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 FMNL3Q8IVF7 1028 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 BBS7Q8IWZ6 715 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 SCML4Q8N228 414 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 SLC30A5Q8TAD4 765 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 ADAM32Q8TC27 787 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 STK32AQ8WU08 396 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 RNF139Q8WU17 664 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 FAM149B1Q96BN6 582 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 CHFRQ96EP1 664 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 TTYH3Q9C0H2 523 aa12.21□□□□□ -0.45
CUX1-207ENST00000465461 SEPT11Q9NVA2 429 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms