RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 SYNCQ9H7C4 482 aa23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 DNMT3LQ9UJW3 386 aa23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 NOCTQ9UK39 431 aaKnown RBP23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 MDM4O15151 490 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 CCDC172P0C7W6 258 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 IRF1P10914 325 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 FERP16591 822 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 IFNAR2P48551 515 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 SNX16P57768 344 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 ZXDBP98169 803 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 CDR2Q01850 454 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 GOLGA8FQ08AF8 430 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 GOLGA8DPQ0D2H9 430 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 BSPRYQ5W0U4 402 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 KLHDC10Q6PID8 442 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 SCUBE3Q8IX30 993 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 ZNF276Q8N554 614 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 WDTC1Q8N5D0 677 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 IPO4Q8TEX9 1081 aaKnown RBP23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 RNF139Q8WU17 664 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 CPXM1Q96SM3 734 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 NUP58Q9BVL2 599 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 GKN1Q9NS71 199 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 RASAL2Q9UJF2 1139 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 MYO6Q9UM54 1294 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 SH3BP1Q9Y3L3 701 aa23.95■■□□□ 1.42
CCDC28B-203ENST00000461819 LSM8O95777 96 aaKnown RBP23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 LTFP02788 710 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 PBX1P40424 430 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 EFEMP1Q12805 493 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 PDGFRLQ15198 375 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 MLF2Q15773 248 aaPredicted RBP23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 SLC44A4Q53GD3 710 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 TMEM31Q5JXX7 168 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 TMEM110Q86TL2 294 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 MIB1Q86YT6 1006 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 BAP1Q92560 729 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 EDEM1Q92611 657 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 FAM149B1Q96BN6 582 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 ZFRQ96KR1 1074 aaKnown RBP23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 TRPV5Q9NQA5 729 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 HEBP1Q9NRV9 189 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 ABCC13Q9NSE7 274 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 OLA1Q9NTK5 396 aaKnown RBP23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 DUS2Q9NX74 493 aaKnown RBP23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 STRIP2Q9ULQ0 834 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 WNT6Q9Y6F9 365 aa23.94■■□□□ 1.42
CCDC28B-203ENST00000461819 KRBA1A5PL33 1030 aa23.93■■□□□ 1.42
CCDC28B-203ENST00000461819 LRRC53A6NM62 1247 aa23.93■■□□□ 1.42
CCDC28B-203ENST00000461819 ARNTLO00327 626 aa23.93■■□□□ 1.42
CCDC28B-203ENST00000461819 FIGNQ5HY92 759 aa23.93■■□□□ 1.42
CCDC28B-203ENST00000461819 TRIM68Q6AZZ1 485 aa23.93■■□□□ 1.42
CCDC28B-203ENST00000461819 HFE2Q6ZVN8 426 aa23.93■■□□□ 1.42
CCDC28B-203ENST00000461819 OSCP1Q8WVF1 389 aa23.93■■□□□ 1.42
CCDC28B-203ENST00000461819 PBXIP1Q96AQ6 731 aa23.93■■□□□ 1.42
CCDC28B-203ENST00000461819 SHDQ96IW2 340 aa23.93■■□□□ 1.42
CCDC28B-203ENST00000461819 EDEM3Q9BZQ6 932 aa23.93■■□□□ 1.42
CCDC28B-203ENST00000461819 TTYH3Q9C0H2 523 aa23.93■■□□□ 1.42
CCDC28B-203ENST00000461819 C11orf16Q9NQ32 467 aa23.93■■□□□ 1.42
CCDC28B-203ENST00000461819 TJP2Q9UDY2 1190 aa23.93■■□□□ 1.42
CCDC28B-203ENST00000461819 COL4A3Q01955 1670 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 FAM170AA1A519 330 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 STK25O00506 426 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 SCAMP3O14828 347 aaKnown RBP23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 PAPSS1O43252 624 aaPredicted RBP23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 GPR37L1O60883 481 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 CDH5P33151 784 aaPredicted RBP23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 KPNA1P52294 538 aaPredicted RBP23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 FMO1Q01740 532 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 TNK2Q07912 1038 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 ASIC2Q16515 512 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 PTPN20Q4JDL3 420 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 IER5LQ5T953 404 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 TPRG1Q6ZUI0 275 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 MSANTD4Q8NCY6 345 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 TTC8Q8TAM2 541 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 ATP2A3Q93084 1043 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 FAM83CQ9BQN1 747 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 TRIM62Q9BVG3 475 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 KLF16Q9BXK1 252 aaPredicted RBP23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 EBF3Q9H4W6 596 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 SEPT11Q9NVA2 429 aaKnown RBP23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 GTSE1Q9NYZ3 720 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 MARCH2Q9P0N8 246 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 PIAS3Q9Y6X2 628 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 MIA3Q5JRA6 1907 aa23.92■■□□□ 1.42
CCDC28B-203ENST00000461819 E2F8A0AVK6 867 aa23.91■■□□□ 1.42
CCDC28B-203ENST00000461819 SLC9A3R1O14745 358 aaPredicted RBP23.91■■□□□ 1.42
CCDC28B-203ENST00000461819 PDGFBP01127 241 aaPredicted RBP23.91■■□□□ 1.42
CCDC28B-203ENST00000461819 ERBB2P04626 1255 aa23.91■■□□□ 1.42
CCDC28B-203ENST00000461819 ARSAP15289 507 aa23.91■■□□□ 1.42
CCDC28B-203ENST00000461819 CHRNB2P17787 502 aa23.91■■□□□ 1.42
CCDC28B-203ENST00000461819 PRKCQQ04759 706 aa23.91■■□□□ 1.42
CCDC28B-203ENST00000461819 ITPRIPL2Q3MIP1 535 aa23.91■■□□□ 1.42
CCDC28B-203ENST00000461819 SFMBT2Q5VUG0 894 aa23.91■■□□□ 1.42
CCDC28B-203ENST00000461819 NAA35Q5VZE5 725 aa23.91■■□□□ 1.42
CCDC28B-203ENST00000461819 TRIM72Q6ZMU5 477 aa23.91■■□□□ 1.42
CCDC28B-203ENST00000461819 FLCNQ8NFG4 579 aa23.91■■□□□ 1.42
CCDC28B-203ENST00000461819 IQCDQ96DY2 449 aa23.91■■□□□ 1.42
CCDC28B-203ENST00000461819 LSM7Q9UK45 103 aaKnown RBP23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms