RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 PMF1Q6P1K2 205 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 ZNF677Q86XU0 584 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 RIN3Q8TB24 985 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 UBA3Q8TBC4 463 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 GOLGA1Q92805 767 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 SPAG5Q96R06 1193 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 IER2Q9BTL4 223 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 NMUR1Q9HB89 426 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 CBX8Q9HC52 389 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 HEBP1Q9NRV9 189 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 FAM207AQ9NSI2 230 aaPredicted RBP12.45□□□□□ -0.42
VPS52-213ENST00000461743 DUS2Q9NX74 493 aaKnown RBP12.45□□□□□ -0.42
VPS52-213ENST00000461743 TBC1D14Q9P2M4 693 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 DNMT3LQ9UJW3 386 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 MYO6Q9UM54 1294 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 HCN4Q9Y3Q4 1203 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 ARIH1Q9Y4X5 557 aaPredicted RBP12.45□□□□□ -0.42
VPS52-213ENST00000461743 CACNA1IQ9P0X4 2223 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 FOXN3O00409 490 aaPredicted RBP12.44□□□□□ -0.42
VPS52-213ENST00000461743 NCAM2O15394 837 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 LSM8O95777 96 aaKnown RBP12.44□□□□□ -0.42
VPS52-213ENST00000461743 PDGFBP01127 241 aaPredicted RBP12.44□□□□□ -0.42
VPS52-213ENST00000461743 CYP11B1P15538 503 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 CTHP32929 405 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 PDCLQ13371 301 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 RUNX3Q13761 415 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 EML3Q32P44 896 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 C10orf120Q5SQS8 335 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 BEND5Q7L4P6 421 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 BHLHA9Q7RTU4 235 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 SCD5Q86SK9 330 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 FLCNQ8NFG4 579 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 EPS8L1Q8TE68 723 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 PCMTD1Q96MG8 357 aaPredicted RBP12.44□□□□□ -0.42
VPS52-213ENST00000461743 SLC4A5Q9BY07 1137 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 LTB4R2Q9NPC1 389 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 HPS4Q9NQG7 708 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 ABCC13Q9NSE7 274 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 OSER1Q9NX31 292 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 CFAP97Q9P2B7 532 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 LSM7Q9UK45 103 aaKnown RBP12.44□□□□□ -0.42
VPS52-213ENST00000461743 STRIP2Q9ULQ0 834 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 SH3BP1Q9Y3L3 701 aa12.44□□□□□ -0.42
VPS52-213ENST00000461743 SPECC1L-ADORA2AF8WAN1 911 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 CCDC172P0C7W6 258 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 LCP1P13796 627 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 CDH5P33151 784 aaPredicted RBP12.43□□□□□ -0.42
VPS52-213ENST00000461743 KRT9P35527 623 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 SOX5P35711 763 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 STAT1P42224 750 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 RPS9P46781 194 aaKnown RBP12.43□□□□□ -0.42
VPS52-213ENST00000461743 RGS7P49802 495 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 KPNA1P52294 538 aaPredicted RBP12.43□□□□□ -0.42
VPS52-213ENST00000461743 POLR2FP61218 127 aaKnown RBP12.43□□□□□ -0.42
VPS52-213ENST00000461743 COG7P83436 770 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 ZXDBP98169 803 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 NR1H3Q13133 447 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 BTBD8Q5XKL5 378 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 MSANTD2Q6P1R3 559 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 DENND1BQ6P3S1 775 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 LRSAM1Q6UWE0 723 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 RSRC2Q7L4I2 434 aaKnown RBP12.43□□□□□ -0.42
VPS52-213ENST00000461743 TMEM110Q86TL2 294 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 SLC47A2Q86VL8 602 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 CCDC105Q8IYK2 499 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 MSANTD4Q8NCY6 345 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 IPO4Q8TEX9 1081 aaKnown RBP12.43□□□□□ -0.42
VPS52-213ENST00000461743 PLD4Q96BZ4 506 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 IQCDQ96DY2 449 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 ZFYVE19Q96K21 471 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 KLF16Q9BXK1 252 aaPredicted RBP12.43□□□□□ -0.42
VPS52-213ENST00000461743 MIS12Q9H081 205 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 GKN1Q9NS71 199 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 ASNSD1Q9NWL6 643 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 SMPD4Q9NXE4 827 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 GTSE1Q9NYZ3 720 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 ZNF510Q9Y2H8 683 aa12.43□□□□□ -0.42
VPS52-213ENST00000461743 MYO18AQ92614 2054 aaKnown RBP12.42□□□□□ -0.42
VPS52-213ENST00000461743 ATG2BQ96BY7 2078 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 YJEFN3A6XGL0 299 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 E7ENQ6 273 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 ADH1CP00326 375 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 SERPINC1P01008 464 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 CALCAP01258 141 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 LTFP02788 710 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 GLI1P08151 1106 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 PNMA6AP0CW24 399 aaPredicted RBP12.42□□□□□ -0.42
VPS52-213ENST00000461743 AVPR2P30518 371 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 EIF2DP41214 584 aaKnown RBP12.42□□□□□ -0.42
VPS52-213ENST00000461743 PGFP49763 221 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 KLK7P49862 253 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 NNTQ13423 1086 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 LRRC32Q14392 662 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 TRIM72Q6ZMU5 477 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 HTR3DQ70Z44 454 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 LUZP1Q86V48 1076 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 ZDHHC17Q8IUH5 632 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 TMEM35BQ8NCS4 154 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 RNF139Q8WU17 664 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 FAM3CQ92520 227 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms