RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 KRT4P19013 534 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 ELK3P41970 407 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 SNX17Q15036 470 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 C4orf33Q8N1A6 199 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 B3GNT5Q9BYG0 378 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 DPEP3Q9H4B8 488 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 RXFP1Q9HBX9 757 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 PNPLA8Q9NP80 782 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 KLHL14Q9P2G3 628 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 GJD2Q9UKL4 321 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 TRIP12Q14669 1992 aaPredicted RBP15.68■□□□□ 0.1
LDLR-202ENST00000455727 DOCK3Q8IZD9 2030 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 CFAP73A6NFT4 308 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 DCAF8L1A6NGE4 600 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 L1CAMP32004 1257 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 GBP2P32456 591 aaPredicted RBP15.67■□□□□ 0.1
LDLR-202ENST00000455727 NR2C2P49116 596 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 NRLP54845 237 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 SF3A3Q12874 501 aaKnown RBP eCLIP15.67■□□□□ 0.19e-7■■□□□ 13.7
LDLR-202ENST00000455727 ZKSCAN8Q15776 578 aaPredicted RBP15.67■□□□□ 0.1
LDLR-202ENST00000455727 CA9Q16790 459 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 TAB3Q8N5C8 712 aaPredicted RBP15.67■□□□□ 0.1
LDLR-202ENST00000455727 C7orf31Q8N865 590 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 PAIP2Q9BPZ3 127 aaKnown RBP15.67■□□□□ 0.1
LDLR-202ENST00000455727 NRDE2Q9H7Z3 1164 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 RAB6BQ9NRW1 208 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 GPATCH2LQ9NWQ4 482 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 HEY1Q9Y5J3 304 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 ZBED1O96006 694 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 FGFR1P11362 822 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 AKAP5P24588 427 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 RBL1P28749 1068 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 CCDC15Q0P6D6 951 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 MAP2K5Q13163 448 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 EFTUD2Q15029 972 aaKnown RBP eCLIP15.67■□□□□ 0.11e-6■■■■□ 19.3
LDLR-202ENST00000455727 IGDCC3Q8IVU1 814 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 DNAJB3Q8WWF6 145 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 KLC2Q9H0B6 622 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 SNX25Q9H3E2 840 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 CHMP2BQ9UQN3 213 aa15.67■□□□□ 0.1
LDLR-202ENST00000455727 PIN4Q9Y237 131 aaKnown RBP15.67■□□□□ 0.1
LDLR-202ENST00000455727 SPTLC1O15269 473 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 TM9SF1O15321 606 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 UBOX5O94941 541 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 FAM163BP0C2L3 166 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 ZNF865P0CJ78 1059 aaPredicted RBP15.66■□□□□ 0.1
LDLR-202ENST00000455727 CYP2F1P24903 491 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 PSEN2P49810 448 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 TAF6P49848 677 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 BNIP1Q12981 228 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 HIC1Q14526 733 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 SLC1A5Q15758 541 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 SV2CQ496J9 727 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 PRAMEF19Q5SWL8 479 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 UBXN11Q5T124 520 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 HHATQ5VTY9 493 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 CYB5D1Q6P9G0 228 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 STRADAQ7RTN6 431 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 TLK2Q86UE8 772 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 CDKL3Q8IVW4 592 aaPredicted RBP15.66■□□□□ 0.1
LDLR-202ENST00000455727 APPL2Q8NEU8 664 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 TMEM40Q8WWA1 233 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 MRRFQ96E11 262 aaKnown RBP15.66■□□□□ 0.1
LDLR-202ENST00000455727 GRID1Q9ULK0 1009 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 TCRBV9S1A1TA0A576 114 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 PDGFRBP09619 1106 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 CCDC130P13994 396 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 LMO2P25791 158 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 CRYBB1P53674 252 aaPredicted RBP15.66■□□□□ 0.1
LDLR-202ENST00000455727 NME8Q8N427 588 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 C2orf69Q8N8R5 385 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 BANPQ8N9N5 519 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 MCUQ8NE86 351 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 LRRC8CQ8TDW0 803 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 SLC44A1Q8WWI5 657 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 LRRC39Q96DD0 335 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 TNIP3Q96KP6 325 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 APOL6Q9BWW8 343 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 PRDM16Q9HAZ2 1276 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 PHTF1Q9UMS5 762 aa15.66■□□□□ 0.1
LDLR-202ENST00000455727 IQANK1A0A1B0GTG1 560 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 KBTBD13C9JR72 458 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 GCATO75600 419 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 ADORA2BP29275 332 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 CPT1AP50416 773 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 ZNF200P98182 395 aaPredicted RBP15.65■□□□□ 0.1
LDLR-202ENST00000455727 FAM133BQ5BKY9 247 aaKnown RBP15.65■□□□□ 0.1
LDLR-202ENST00000455727 PPP6R3Q5H9R7 873 aaPredicted RBP15.65■□□□□ 0.1
LDLR-202ENST00000455727 EFHC1Q5JVL4 640 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 OLFML2BQ68BL8 750 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 LPIN3Q9BQK8 851 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 ETNK2Q9NVF9 386 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 Q9Y3F1 56 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 TRDMT1O14717 391 aaKnown RBP15.65■□□□□ 0.1
LDLR-202ENST00000455727 EDF1O60869 148 aaKnown RBP15.65■□□□□ 0.1
LDLR-202ENST00000455727 FAM155BO75949 473 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 GSTA2P09210 222 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 TFE3P19532 575 aaPredicted RBP15.65■□□□□ 0.1
LDLR-202ENST00000455727 WARSP23381 471 aaKnown RBP15.65■□□□□ 0.1
LDLR-202ENST00000455727 DNAJC3Q13217 504 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms