RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 COG7P83436 770 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 ZXDBP98169 803 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 CREB5Q02930 508 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 INCA1Q0VD86 236 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 CCDC142Q17RM4 750 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 EDRF1Q3B7T1 1238 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 STPG1Q5TH74 334 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 RNF43Q68DV7 783 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 KRT39Q6A163 491 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 ANO7Q6IWH7 933 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 SLC36A4Q6YBV0 504 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 SCARA5Q6ZMJ2 495 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 PAQR9Q6ZVX9 377 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 LPCAT2Q7L5N7 544 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 FAM186BQ8IYM0 893 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 GRAMD1CQ8IYS0 662 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 SCAMP5Q8TAC9 235 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 SLC2A14Q8TDB8 520 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 UBXN6Q9BZV1 441 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 DCLK3Q9C098 648 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 NIF3L1Q9GZT8 377 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 GZF1Q9H116 711 aaPredicted RBP7.47□□□□□ -1.21
VPS41-208ENST00000448833 TMEM8AQ9HCN3 771 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 CYLDQ9NQC7 956 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 KRT82Q9NSB4 513 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 BCCIPQ9P287 314 aaKnown RBP eCLIP7.47□□□□□ -1.21
VPS41-208ENST00000448833 DNMT3LQ9UJW3 386 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 STARD13Q9Y3M8 1113 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 NME7Q9Y5B8 376 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 AP5Z1O43299 807 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 GDF9O60383 454 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 ZNF217O75362 1048 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 ZNF202O95125 648 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 SMC2O95347 1197 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 KLF8O95600 359 aaPredicted RBP7.46□□□□□ -1.22
VPS41-208ENST00000448833 EPB41P11171 864 aaKnown RBP7.46□□□□□ -1.22
VPS41-208ENST00000448833 NTSR1P30989 418 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 PPP1R2P41236 205 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 ASPAP45381 313 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 NDUFA8P51970 172 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 MCCD1P59942 119 aaPredicted RBP7.46□□□□□ -1.22
VPS41-208ENST00000448833 YWHAEP62258 255 aaKnown RBP7.46□□□□□ -1.22
VPS41-208ENST00000448833 DLG4P78352 724 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 DPYDQ12882 1025 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 LMAN2Q12907 356 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 SF3A2Q15428 464 aaKnown RBP7.46□□□□□ -1.22
VPS41-208ENST00000448833 ANO4Q32M45 955 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 LY6G5CQ5SRR4 150 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 PMS2CLQ68D20 193 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 GRAMD4Q6IC98 578 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 KRBA2Q6ZNG9 492 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 CCDC186Q7Z3E2 898 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 CYP2U1Q7Z449 544 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 PGBD3Q8N328 593 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 CCDC33Q8N5R6 958 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 ALLCQ8N6M5 410 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 ZNF513Q8N8E2 541 aaPredicted RBP7.46□□□□□ -1.22
VPS41-208ENST00000448833 IL17RCQ8NAC3 791 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 TXNDC5Q8NBS9 432 aaKnown RBP7.46□□□□□ -1.22
VPS41-208ENST00000448833 FBXL13Q8NEE6 735 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 CEP76Q8TAP6 659 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 PLEKHO2Q8TD55 490 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 EZH1Q92800 747 aaPredicted RBP7.46□□□□□ -1.22
VPS41-208ENST00000448833 CHAMP1Q96JM3 812 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 HEXIM2Q96MH2 286 aaKnown RBP7.46□□□□□ -1.22
VPS41-208ENST00000448833 GSDMAQ96QA5 445 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 TSG101Q99816 390 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 SMOQ99835 787 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 LSM14BQ9BX40 385 aaKnown RBP7.46□□□□□ -1.22
VPS41-208ENST00000448833 NUSAP1Q9BXS6 441 aaKnown RBP7.46□□□□□ -1.22
VPS41-208ENST00000448833 DUSP16Q9BY84 665 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 CCSER2Q9H7U1 834 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 TMEM30AQ9NV96 361 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 CLIC5Q9NZA1 410 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 GMIPQ9P107 970 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 KIAA1257Q9ULG3 409 aa7.46□□□□□ -1.22
VPS41-208ENST00000448833 TNRC6BQ9UPQ9 1833 aaKnown RBP7.45□□□□□ -1.22
VPS41-208ENST00000448833 GFRA2O00451 464 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 TM4SF5O14894 197 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 CACNG3O60359 315 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 TULP3O75386 442 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 CYBBP04839 570 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 RARGP13631 454 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 CCDC130P13994 396 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 ACO1P21399 889 aaKnown RBP7.45□□□□□ -1.22
VPS41-208ENST00000448833 ADORA2BP29275 332 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 RDXP35241 583 aaKnown RBP7.45□□□□□ -1.22
VPS41-208ENST00000448833 P2RY2P41231 377 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 KIR2DL1P43626 348 aaPredicted RBP7.45□□□□□ -1.22
VPS41-208ENST00000448833 SLC6A11P48066 632 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 GCLMP48507 274 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 KIF11P52732 1056 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 FKBP3Q00688 224 aaKnown RBP7.45□□□□□ -1.22
VPS41-208ENST00000448833 STIM1Q13586 685 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 PKP1Q13835 747 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 BECN1Q14457 450 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 GAB4Q2WGN9 574 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 C10orf120Q5SQS8 335 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 CLEC20AQ6ZU45 233 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 TTC30AQ86WT1 665 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms