RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 AMPD1P23109 780 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 NOS2P35228 1153 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 TOP6BLQ8N6T0 577 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 MYLPFQ96A32 169 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 SHISA4Q96DD7 197 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 KREMEN1Q96MU8 473 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 TGS1Q96RS0 853 aaKnown RBP7.67□□□□□ -1.18
SYNE1-213ENST00000448038 MRPL45Q9BRJ2 306 aaKnown RBP7.67□□□□□ -1.18
SYNE1-213ENST00000448038 NTPCRQ9BSD7 190 aaKnown RBP7.67□□□□□ -1.18
SYNE1-213ENST00000448038 ABCC13Q9NSE7 274 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 NCAM2O15394 837 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 ENDOD1O94919 500 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 RFC1P35251 1148 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 LIG3P49916 1009 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 TUBP50607 506 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 PTK7Q13308 1070 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 PDAP1Q13442 181 aaKnown RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 C15orf59Q2T9L4 293 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 ZNF792Q3KQV3 632 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 USP41Q3LFD5 358 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 BEND6Q5SZJ8 279 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 FAM183BPQ6ZVS7 135 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 PBXIP1Q96AQ6 731 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 ELMO2Q96JJ3 720 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 PPCSQ9HAB8 311 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 TRMT13Q9NUP7 481 aaKnown RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 MORF4L1Q9UBU8 362 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 CBX4O00257 560 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 ZBTB22O15209 634 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 SMIM24O75264 130 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 CST3P01034 146 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 CKBP12277 381 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 SPRP35270 261 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 HSPA9P38646 679 aaKnown RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 NOMO3P69849 1222 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 TCHHQ07283 1943 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 SH2D3CQ8N5H7 860 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 BLOC1S5Q8TDH9 187 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 CHMP6Q96FZ7 201 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 PNKPQ96T60 521 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 TKTL2Q9H0I9 626 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 VCXQ9H320 206 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 WHRNQ9P202 907 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 PKP3Q9Y446 797 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 COL2A1P02458 1487 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 CLDN5O00501 218 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 OPLAHO14841 1288 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 CYP1A2P05177 515 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 CTNNB1P35222 781 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 VCPP55072 806 aaKnown RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 DAW1Q8N136 415 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 C4orf33Q8N1A6 199 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 WNT8BQ93098 351 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 HTATIP2Q9BUP3 242 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 ALG13Q9NP73 1137 aaKnown RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 NSMCE4AQ9NXX6 385 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 PPARGC1AQ9UBK2 798 aaKnown RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 APOBEC2Q9Y235 224 aaKnown RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 PCDHGC5Q9Y5F6 944 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 GMNCA6NCL1 334 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 XYLBO75191 536 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 WEE1P30291 646 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 HNRNPH3P31942 346 aaKnown RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 PBX1P40424 430 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 ACLYP53396 1101 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 PPP1R26Q5T8A7 1209 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 OLFML2BQ68BL8 750 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 PHF13Q86YI8 300 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 LRRC43Q8N309 656 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 USP13Q92995 863 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 KLHL29Q96CT2 875 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 TSPAN17Q96FV3 270 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 ZIM3Q96PE6 472 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 DCLK3Q9C098 648 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 NT5MQ9NPB1 228 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 MARCH2Q9P0N8 246 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 DMGDHQ9UI17 866 aaKnown RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 DCTN4Q9UJW0 460 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 RPS6KL1Q9Y6S9 549 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 STX7O15400 261 aaKnown RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 TSPAN3O60637 253 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 LGR5O75473 907 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 MTA1Q13330 715 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 GTF2H3Q13889 308 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 KIF19Q2TAC6 998 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 LDLRAD1Q5T700 205 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 UCMAQ8WVF2 138 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 TUBB6Q9BUF5 446 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 ROPN1BQ9BZX4 212 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 ROPN1Q9HAT0 212 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-213ENST00000448038 SLC25A13Q9UJS0 675 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 NHSQ6T4R5 1651 aa7.66□□□□□ -1.18
SYNE1-213ENST00000448038 NVLO15381 856 aaKnown RBP7.65□□□□□ -1.18
SYNE1-213ENST00000448038 RAMP2O60895 175 aa7.65□□□□□ -1.18
SYNE1-213ENST00000448038 BAG2O95816 211 aa7.65□□□□□ -1.18
SYNE1-213ENST00000448038 SNRPAP09012 282 aaKnown RBP7.65□□□□□ -1.18
SYNE1-213ENST00000448038 ESRRAP11474 423 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-213ENST00000448038 OR1E1P30953 314 aa7.65□□□□□ -1.18
SYNE1-213ENST00000448038 PCK1P35558 622 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms