RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 ANP32AP39687 249 aaKnown RBP20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 EIF2DP41214 584 aaKnown RBP20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 BCAT1P54687 386 aa20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 PREPLQ4J6C6 727 aaPredicted RBP20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 ARHGAP17Q68EM7 881 aa20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 RHBDF2Q6PJF5 856 aa20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 TTC30AQ86WT1 665 aa20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 MIB1Q86YT6 1006 aa20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 ARHGAP18Q8N392 663 aa20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 PPM1KQ8N3J5 372 aa20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 EZH1Q92800 747 aaPredicted RBP20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 NMUR1Q9HB89 426 aa20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 POLR3BQ9NW08 1133 aaPredicted RBP20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 RASAL2Q9UJF2 1139 aa20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 SDK1Q7Z5N4 2213 aa20.89■□□□□ 0.93
SHROOM1-204ENST00000440118 PPP1R3GB7ZBB8 358 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 MDM4O15151 490 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 AXIN1O15169 862 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 FGFR1OPO95684 399 aaKnown RBP20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 HOXC13P31276 330 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 SLC6A11P48066 632 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 CAMK4Q16566 473 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 GAB4Q2WGN9 574 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 NUDT18Q6ZVK8 323 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 PIGZQ86VD9 579 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 CREBRFQ8IUR6 639 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 NAT16Q8N8M0 369 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 ANKRD52Q8NB46 1076 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 GAB3Q8WWW8 586 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 DUSP9Q99956 384 aaKnown RBP20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 KLF16Q9BXK1 252 aaPredicted RBP20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 LRRC4Q9HBW1 653 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 OSER1Q9NX31 292 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 TSPAN16Q9UKR8 245 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 PCDHB4Q9Y5E5 795 aa20.88■□□□□ 0.93
SHROOM1-204ENST00000440118 CCDC163A0A0D9SF12 145 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 RETP07949 1114 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 BMP6P22004 513 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 GRIA2P42262 883 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 TKTL1P51854 596 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 LMNB2Q03252 620 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 SPEM2Q0P670 501 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 BST2Q10589 180 aaKnown RBP20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 KLHDC10Q6PID8 442 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 TMEM270Q6UE05 265 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 C12orf40Q86WS4 652 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 SIX6OS1Q8N1H7 587 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 CCDC33Q8N5R6 958 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 TRIML1Q8N9V2 468 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 USP33Q8TEY7 942 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 IPO9Q96P70 1041 aaKnown RBP20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 SPHK2Q9NRA0 654 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 DEC1Q9P2X7 70 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 STRIP2Q9ULQ0 834 aa20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.87■□□□□ 0.93
SHROOM1-204ENST00000440118 DMXL1Q9Y485 3027 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 MYO18AQ92614 2054 aaKnown RBP20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 TBC1D3BA6NDS4 549 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 NEDD8-MDP1E9PL57 170 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 K7EQS6 105 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 HOXC11O43248 304 aaPredicted RBP20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 TIE1P35590 1138 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 PLA2G4AP47712 749 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 DGKEP52429 567 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 MRPS21P82921 87 aaKnown RBP20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 EFEMP1Q12805 493 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 FOXR2Q6PJQ5 311 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 CACNA2D4Q7Z3S7 1137 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 FAM160A2Q8N612 972 aaPredicted RBP20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 WBP2Q969T9 261 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 BBS2Q9BXC9 721 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 SRRTQ9BXP5 876 aaKnown RBP20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 CLIC5Q9NZA1 410 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 USP3Q9Y6I4 520 aa20.86■□□□□ 0.93
SHROOM1-204ENST00000440118 XPO1O14980 1071 aaKnown RBP20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 P4HA2O15460 535 aa20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 AFPP02771 609 aaKnown RBP20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 HMBSP08397 361 aa20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 VDRP11473 427 aa20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 YWHAGP61981 247 aaKnown RBP eCLIP20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 PDE4CQ08493 712 aa20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 ADIGQ0VDE8 80 aa20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 ANO7Q6IWH7 933 aa20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 TPGS1Q6ZTW0 290 aa20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 HTR3DQ70Z44 454 aa20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 SCD5Q86SK9 330 aa20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 TMEM25Q86YD3 366 aa20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 XPO6Q96QU8 1125 aaKnown RBP20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 UBXN6Q9BZV1 441 aa20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 DNAJC17Q9NVM6 304 aaKnown RBP20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 KIAA1257Q9ULG3 409 aa20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 MMP17Q9ULZ9 603 aa20.85■□□□□ 0.93
SHROOM1-204ENST00000440118 TULP3O75386 442 aa20.84■□□□□ 0.93
SHROOM1-204ENST00000440118 ALDH1A2O94788 518 aa20.84■□□□□ 0.93
SHROOM1-204ENST00000440118 KLF8O95600 359 aaPredicted RBP20.84■□□□□ 0.93
SHROOM1-204ENST00000440118 ZBED1O96006 694 aa20.84■□□□□ 0.93
SHROOM1-204ENST00000440118 SETSIPP0DME0 302 aa20.84■□□□□ 0.93
SHROOM1-204ENST00000440118 KCNH2Q12809 1159 aa20.84■□□□□ 0.93
SHROOM1-204ENST00000440118 C10orf76Q5T2E6 689 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms