RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 SLC39A2Q9NP94 309 aa8.24□□□□□ -1.09
VPS50-204ENST00000438395 DMAP1Q9NPF5 467 aaPredicted RBP8.24□□□□□ -1.09
VPS50-204ENST00000438395 KRT82Q9NSB4 513 aa8.24□□□□□ -1.09
VPS50-204ENST00000438395 EBF1Q9UH73 591 aa8.24□□□□□ -1.09
VPS50-204ENST00000438395 SH3BP1Q9Y3L3 701 aa8.24□□□□□ -1.09
VPS50-204ENST00000438395 DNAH14Q0VDD8 3507 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 PVALEFA0A1B0GWK0 134 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 CLDN5O00501 218 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 KHNYNO15037 678 aaKnown RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 DCLK1O15075 740 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 KIF20AO95235 890 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 KAT7O95251 611 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 KLF8O95600 359 aaPredicted RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 OAS1P00973 400 aaKnown RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 HOXC13P31276 330 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 HOXD13P35453 343 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 EIF2DP41214 584 aaKnown RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 DHPSP49366 369 aaPredicted RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 RAB15P59190 212 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 MRPS21P82921 87 aaKnown RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 KDSRQ06136 332 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 NCOA4Q13772 614 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 BYSLQ13895 437 aaKnown RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 DHCR24Q15392 516 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 ST3GAL2Q16842 350 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 KNOP1Q1ED39 458 aaKnown RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 HSF5Q4G112 596 aaPredicted RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 EOGTQ5NDL2 527 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 HECTD3Q5T447 861 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 SHC4Q6S5L8 630 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 TRMT11Q7Z4G4 463 aaKnown RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 LIMS2Q7Z4I7 341 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 FAM35AQ86V20 835 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 PGBD3Q8N328 593 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 SCFD1Q8WVM8 642 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 OVCA2Q8WZ82 227 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 OTUB2Q96DC9 234 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 CNOT6LQ96LI5 555 aaKnown RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 KCTD15Q96SI1 283 aaPredicted RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 PNKPQ96T60 521 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 LINC00597Q9H2U6 94 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 DPEP3Q9H4B8 488 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 SMOC1Q9H4F8 434 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 SMYD3Q9H7B4 428 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 ARHGEF4Q9NR80 690 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 POLR3BQ9NW08 1133 aaPredicted RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 LSM7Q9UK45 103 aaKnown RBP8.23□□□□□ -1.09
VPS50-204ENST00000438395 CFAP45Q9UL16 551 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 MMP17Q9ULZ9 603 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 INVSQ9Y283 1065 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 FRMD4BQ9Y2L6 1034 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 TCHHQ07283 1943 aa8.23□□□□□ -1.09
VPS50-204ENST00000438395 USP24Q9UPU5 2620 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 E2F8A0AVK6 867 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 BCLAF3A2AJT9 711 aaKnown RBP8.22□□□□□ -1.09
VPS50-204ENST00000438395 TBC1D3BA6NDS4 549 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 TGFB1I1O43294 461 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 STAU1O95793 577 aaKnown RBP8.22□□□□□ -1.09
VPS50-204ENST00000438395 ZSCAN22P10073 491 aaPredicted RBP8.22□□□□□ -1.09
VPS50-204ENST00000438395 IRF1P10914 325 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 OPRD1P41143 372 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 GRIA2P42262 883 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 PIK3CAP42336 1068 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 DPP6P42658 865 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 NOVA1P51513 510 aaKnown RBP8.22□□□□□ -1.09
VPS50-204ENST00000438395 SLC5A3P53794 718 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 GAD2Q05329 585 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 PTK2Q05397 1052 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 CRY1Q16526 586 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 BMT2Q1RMZ1 405 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 ANO4Q32M45 955 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 PMS2CLQ68D20 193 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 SCARA3Q6AZY7 606 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 ATL3Q6DD88 541 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 TCEAL6Q6IPX3 200 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 LPCAT2Q7L5N7 544 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 C12orf56Q8IXR9 622 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 ALLCQ8N6M5 410 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 TXNDC5Q8NBS9 432 aaKnown RBP8.22□□□□□ -1.09
VPS50-204ENST00000438395 CCDC150Q8NCX0 1101 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 HMGB4Q8WW32 186 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 TCEAL3Q969E4 200 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 B3GNT5Q9BYG0 378 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 DUSP15Q9H1R2 295 aaPredicted RBP8.22□□□□□ -1.09
VPS50-204ENST00000438395 DEC1Q9P2X7 70 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 IGF2RP11717 2491 aa8.22□□□□□ -1.09
VPS50-204ENST00000438395 TCRBV21S2A2A0A5A6 115 aa8.21□□□□□ -1.1
VPS50-204ENST00000438395 COCHO43405 550 aa8.21□□□□□ -1.1
VPS50-204ENST00000438395 TLR5O60602 858 aa8.21□□□□□ -1.1
VPS50-204ENST00000438395 OLFM2O95897 454 aa8.21□□□□□ -1.1
VPS50-204ENST00000438395 F13A1P00488 732 aa8.21□□□□□ -1.1
VPS50-204ENST00000438395 CST3P01034 146 aaPredicted RBP8.21□□□□□ -1.1
VPS50-204ENST00000438395 RPN1P04843 607 aaKnown RBP8.21□□□□□ -1.1
VPS50-204ENST00000438395 SLFN14P0C7P3 912 aa8.21□□□□□ -1.1
VPS50-204ENST00000438395 FAM200BP0CF97 657 aa8.21□□□□□ -1.1
VPS50-204ENST00000438395 CASP1P29466 404 aa8.21□□□□□ -1.1
VPS50-204ENST00000438395 TNFRSF4P43489 277 aa8.21□□□□□ -1.1
VPS50-204ENST00000438395 CASP4P49662 377 aa8.21□□□□□ -1.1
VPS50-204ENST00000438395 TUBP50607 506 aa8.21□□□□□ -1.1
VPS50-204ENST00000438395 ATXN3P54252 364 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms