RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SP110Q9HB58 689 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 INO80B-WBP1J3KQ70 363 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 NDUFS3O75489 264 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 RP1P56715 2156 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 TRIM28Q13263 835 aaKnown RBP7.4□□□□□ -1.23
VPS53-204ENST00000437048 KRT33BQ14525 404 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 ZNF618Q5T7W0 954 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 DHFR2Q86XF0 187 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 SPATA18Q8TC71 538 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 DLC1Q96QB1 1528 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 A0A0X1KG70 313 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 MFN2O95140 757 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 IFNA16P05015 189 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 DPYDQ12882 1025 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 OR6P1Q8NGX9 317 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 RAB2BQ8WUD1 216 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 KCNB2Q92953 911 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 PHF20Q9BVI0 1012 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 SPATA2Q9UM82 520 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 DYRK3O43781 588 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 MED24O75448 989 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 PCSK1P29120 753 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 SLC26A3P40879 764 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 SMCR8Q8TEV9 937 aaPredicted RBP7.4□□□□□ -1.23
VPS53-204ENST00000437048 MAF1Q9H063 256 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 WDR41Q9HAD4 459 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 RBM12Q9NTZ6 932 aaKnown RBP7.4□□□□□ -1.23
VPS53-204ENST00000437048 APRTP07741 180 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 STRIP1Q5VSL9 837 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 INTS13Q9NVM9 706 aa7.4□□□□□ -1.23
VPS53-204ENST00000437048 ZNF804BA4D1E1 1349 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 A0A1W2PRG6 482 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 HACD1B0YJ81 288 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 MAP2K7O14733 419 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 MAGEB3O15480 346 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 HARS2P49590 506 aaKnown RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 C1QBPQ07021 282 aaKnown RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 STX4Q12846 297 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 PI4K2BQ8TCG2 481 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 TASP1Q9H6P5 420 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 MCUBQ9NWR8 336 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 GMIPQ9P107 970 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 C2CD2Q9Y426 696 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 MLNP12872 115 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 PAICSP22234 425 aaKnown RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 TRIM25Q14258 630 aaKnown RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 KIF22Q14807 665 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 PCBP1Q15365 356 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS53-204ENST00000437048 ELMOD1Q8N336 334 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 QRFPRQ96P65 431 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 ZCCHC17Q9NP64 241 aaKnown RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 FEM1BQ9UK73 627 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 IGSF1Q8N6C5 1336 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 VPS26AO75436 327 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 ATP6V1B1P15313 513 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 POU5F1BQ06416 359 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 H0YIN7 160 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 PRDX6P30041 224 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 COILP38432 576 aaPredicted RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 RBP5P82980 135 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 POU4F1Q01851 419 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 SYDE2Q5VT97 1194 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 DHDDSQ86SQ9 333 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 RHBDF1Q96CC6 855 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 NGLY1Q96IV0 654 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 MYL10Q9BUA6 226 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 TRHDEQ9UKU6 1024 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 PPM1LQ5SGD2 360 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 LRRC38Q5VT99 294 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 TMEM270Q6UE05 265 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 PEX5LQ8IYB4 626 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 ATPAF2Q8N5M1 289 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 HM13Q8TCT9 377 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 ANKEF1Q9NU02 776 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 ST3GAL5Q9UNP4 418 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 ARHGEF33A8MVX0 844 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 GUCA1AP43080 201 aaPredicted RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 FOXD4Q12950 439 aaPredicted RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 STK40Q8N2I9 435 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 SRBD1Q8N5C6 995 aaKnown RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 PACRGLQ8N7B6 248 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 UBDO15205 165 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 MGRN1O60291 552 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 WEE2P0C1S8 567 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 VAV1P15498 845 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 MAPKAPK2P49137 400 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 SCN1BQ07699 218 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 ACVR2BQ13705 512 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 DCAF6Q58WW2 860 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 METTL3Q86U44 580 aaKnown RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 PAIP1Q9H074 479 aaKnown RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 HMGXB4Q9UGU5 601 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 VPS51Q9UID3 782 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS53-204ENST00000437048 PEX16Q9Y5Y5 336 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 ERBB3P21860 1342 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 C2CD2LO14523 706 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 F8A1P23610 371 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 GALNT3Q14435 633 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 FAM187BQ17R55 369 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms