RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 HAUS4Q9H6D7 363 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 CCSER2Q9H7U1 834 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 KCNK12Q9HB15 430 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 LRRC4Q9HBW1 653 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 CLIC5Q9NZA1 410 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 NENFQ9UMX5 172 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 CCL26Q9Y258 94 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 ZDBF2Q9HCK1 2354 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 DDX3XO00571 662 aaKnown RBP eCLIP13.04□□□□□ -0.32
USP40-205ENST00000430158 COCHO43405 550 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 ECI2O75521 394 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 FBXO21O94952 628 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 TBX18O95935 607 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 ASGR2P07307 311 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 SKILP12757 684 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 LCP1P13796 627 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 MMP8P22894 467 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 PLCB2Q00722 1185 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 CENPCQ03188 943 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 GOLGA8FQ08AF8 430 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 GOLGA8DPQ0D2H9 430 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 TRIM14Q14142 442 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 CLEC16AQ2KHT3 1053 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 HECTD3Q5T447 861 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 NAA35Q5VZE5 725 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 KLHDC10Q6PID8 442 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 OLFML1Q6UWY5 402 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 TRIM72Q6ZMU5 477 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 PHF13Q86YI8 300 aaPredicted RBP13.04□□□□□ -0.32
USP40-205ENST00000430158 RNF135Q8IUD6 432 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 FMNL3Q8IVF7 1028 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 DRC7Q8IY82 874 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 SLC44A3Q8N4M1 653 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 CPA5Q8WXQ8 436 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 NXPE3Q969Y0 559 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 ELSPBP1Q96BH3 223 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 GCNAQ96QF7 691 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 SMG9Q9H0W8 520 aaKnown RBP13.04□□□□□ -0.32
USP40-205ENST00000430158 TLR8Q9NR97 1041 aaKnown RBP13.04□□□□□ -0.32
USP40-205ENST00000430158 OBP2AQ9NY56 170 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 IGSF9Q9P2J2 1179 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 ARHGAP26Q9UNA1 814 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 NUMBLQ9Y6R0 609 aa13.04□□□□□ -0.32
USP40-205ENST00000430158 TRAV19A0A0A6YYK7 116 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 TCRBV5S1A1TA0A578 114 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 GREM1O60565 184 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 TLR5O60602 858 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 MFAP3LO75121 409 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 PLEKP08567 350 aaPredicted RBP13.03□□□□□ -0.32
USP40-205ENST00000430158 CCDC172P0C7W6 258 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 RARGP13631 454 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 HDCP19113 662 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 YWHAGP61981 247 aaKnown RBP eCLIP13.03□□□□□ -0.32
USP40-205ENST00000430158 TAF5Q15542 800 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 ASTE1Q2TB18 679 aaPredicted RBP13.03□□□□□ -0.32
USP40-205ENST00000430158 BSPRYQ5W0U4 402 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 VITQ6UXI7 678 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 BEND5Q7L4P6 421 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 TMC6Q7Z403 805 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 XYLT1Q86Y38 959 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 SIX6OS1Q8N1H7 587 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 TC2NQ8N9U0 490 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 OR8K1Q8NGG5 319 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 UHRF1Q96T88 793 aaPredicted RBP13.03□□□□□ -0.32
USP40-205ENST00000430158 KLF16Q9BXK1 252 aaPredicted RBP13.03□□□□□ -0.32
USP40-205ENST00000430158 ST7Q9NRC1 585 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 TAS2R14Q9NYV8 317 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 ARHGAP20Q9P2F6 1191 aa13.03□□□□□ -0.32
USP40-205ENST00000430158 COL4A2P08572 1712 aa13.02□□□□□ -0.32
USP40-205ENST00000430158 SERPING1P05155 500 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 CDC25BP30305 580 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 SCNN1AP37088 669 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 ADKP55263 362 aaKnown RBP13.02□□□□□ -0.33
USP40-205ENST00000430158 KLHL30Q0D2K2 578 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 FCHO2Q0JRZ9 810 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 USP4Q13107 963 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 EIF4EBP2Q13542 120 aaPredicted RBP13.02□□□□□ -0.33
USP40-205ENST00000430158 ZNF77Q15935 545 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 C2CD6Q53TS8 623 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 MSANTD2Q6P1R3 559 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 FAM183BPQ6ZVS7 135 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 MTSS1LQ765P7 747 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 MON1BQ7L1V2 547 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 ARHGAP18Q8N392 663 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 ZNF397Q8NF99 534 aaPredicted RBP13.02□□□□□ -0.33
USP40-205ENST00000430158 WBP2Q969T9 261 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 C18orf8Q96DM3 657 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 SLC2A13Q96QE2 648 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 KXD1Q9BQD3 176 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 MIS12Q9H081 205 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 SLITRK6Q9H5Y7 841 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 ZFP14Q9HCL3 533 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 TRPC7Q9HCX4 862 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 TDP1Q9NUW8 608 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 ASNSD1Q9NWL6 643 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 NAGPAQ9UK23 515 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 NUDT5Q9UKK9 219 aa13.02□□□□□ -0.33
USP40-205ENST00000430158 BZW2Q9Y6E2 419 aaKnown RBP13.02□□□□□ -0.33
USP40-205ENST00000430158 HEPACAM2A8MVW5 462 aa13.01□□□□□ -0.33
USP40-205ENST00000430158 ARNTLO00327 626 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms