RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 BTBD10Q9BSF8 475 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 ELOVL4Q9GZR5 314 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 AVENQ9NQS1 362 aaPredicted RBP8.98□□□□□ -0.97
USP40-203ENST00000427112 PSAT1Q9Y617 370 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 COL5A3P25940 1745 aaPredicted RBP8.98□□□□□ -0.97
USP40-203ENST00000427112 AIM2O14862 343 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 PSMG1O95456 288 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 AMHP03971 560 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 ZNF286BP0CG31 522 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 GNL1P36915 607 aaPredicted RBP8.98□□□□□ -0.97
USP40-203ENST00000427112 SERPINB5P36952 375 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 CAV1Q03135 178 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 CIAPIN1Q6FI81 312 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 ABHD15Q6UXT9 468 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 RPS27LQ71UM5 84 aaKnown RBP8.98□□□□□ -0.97
USP40-203ENST00000427112 SAMD3Q8N6K7 520 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 NMD3Q96D46 503 aaKnown RBP8.98□□□□□ -0.97
USP40-203ENST00000427112 TRIM11Q96F44 468 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 FAM81BQ96LP2 452 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 ZNF408Q9H9D4 720 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 GOLGA2P5Q9HBQ8 144 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 LGALS13Q9UHV8 139 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 NUP205Q92621 2012 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 NRAPQ86VF7 1730 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 A0A087WZ62 844 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 LACTBL1A8MY62 500 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 CCDC22O60826 627 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 OR6B1O95007 311 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 PROCP04070 461 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 CALB1P05937 261 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 CCNB1P14635 433 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 PKNOX1P55347 436 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 PITX1P78337 314 aaPredicted RBP8.98□□□□□ -0.97
USP40-203ENST00000427112 CUL3Q13618 768 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 BLMHQ13867 455 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 OR6B3Q8NGW1 331 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 FAM172AQ8WUF8 416 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 E2F7Q96AV8 911 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 OTUD5Q96G74 571 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 FDXACB1Q9BRP7 624 aaPredicted RBP8.98□□□□□ -0.97
USP40-203ENST00000427112 SMG5Q9UPR3 1016 aaKnown RBP8.98□□□□□ -0.97
USP40-203ENST00000427112 TRIP11Q15643 1979 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 GPR25O00155 361 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 MAP3K7O43318 606 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 STBD1O95210 358 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 GARTP22102 1010 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 ACAT1P24752 427 aaKnown RBP8.97□□□□□ -0.97
USP40-203ENST00000427112 NDST1P52848 882 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 RIPK1Q13546 671 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 STXBP2Q15833 593 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 RABGAP1LQ5R372 815 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 STYK1Q6J9G0 422 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 FAM183BPQ6ZVS7 135 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 RAPH1Q70E73 1250 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 BANPQ8N9N5 519 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 CCHCR1Q8TD31 782 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 SH3TC2Q8TF17 1288 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 MTBPQ96DY7 904 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 ERLEC1Q96DZ1 483 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 GBP5Q96PP8 586 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 KCNK13Q9HB14 408 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 PCDH9Q9HC56 1237 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 PTPRHQ9HD43 1115 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 SNX10Q9Y5X0 201 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 USP34Q70CQ2 3546 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 DCXO43602 365 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 ASS1P00966 412 aaKnown RBP8.97□□□□□ -0.97
USP40-203ENST00000427112 CCDC130P13994 396 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 GNAZP19086 355 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 SP100P23497 879 aaPredicted RBP8.97□□□□□ -0.97
USP40-203ENST00000427112 LMNB2Q03252 620 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 EFCAB12Q6NXP0 572 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 CEP128Q6ZU80 1094 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 HPS6Q86YV9 775 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 ZSCAN18Q8TBC5 510 aaPredicted RBP8.97□□□□□ -0.97
USP40-203ENST00000427112 FBXL18Q96ME1 805 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 SH3GL3Q99963 347 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 BTBD7Q9P203 1132 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 IQANK1A0A1B0GTG1 560 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 AKAP5P24588 427 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 IGFBP6P24592 240 aaPredicted RBP8.97□□□□□ -0.97
USP40-203ENST00000427112 BACE1P56817 501 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 C1QBPQ07021 282 aaKnown RBP8.97□□□□□ -0.97
USP40-203ENST00000427112 ITGA9Q13797 1035 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 LAYNQ6UX15 382 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 PHF13Q86YI8 300 aaPredicted RBP8.97□□□□□ -0.97
USP40-203ENST00000427112 RNF135Q8IUD6 432 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 RNF168Q8IYW5 571 aaPredicted RBP8.97□□□□□ -0.97
USP40-203ENST00000427112 NAT8LQ8N9F0 302 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 MIPOL1Q8TD10 442 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 ANKRD36BP1Q96IX9 119 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 SPATA33Q96N06 139 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 GCNAQ96QF7 691 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 TUBGCP5Q96RT8 1024 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 PCYT2Q99447 389 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 PORCNQ9H237 461 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 DPEP3Q9H4B8 488 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 WDR55Q9H6Y2 383 aaPredicted RBP8.97□□□□□ -0.97
USP40-203ENST00000427112 RPF1Q9H9Y2 349 aaKnown RBP8.97□□□□□ -0.97
USP40-203ENST00000427112 PAPOLBQ9NRJ5 636 aaKnown RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms