RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TRIM24O15164 1050 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ITGB3P05106 788 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 POLR2EP19388 210 aaKnown RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 WEE1P30291 646 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 TLX1P31314 330 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SCNN1BP51168 640 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 COPZ1P61923 177 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 C12orf60Q5U649 245 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 EPHX4Q8IUS5 362 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 FEZF2Q8TBJ5 459 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 VTA1Q9NP79 307 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 RRN3Q9NYV6 651 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SPATA31A3Q5VYP0 1347 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 MROH7Q68CQ1 1323 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 URADA6NGE7 173 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 SLCO1B7G3V0H7 640 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 CYP27B1O15528 508 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 GRAP2O75791 330 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 TRIM49P0CI25 452 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 TRIM49CP0CI26 452 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 ALDH9A1P49189 494 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 ATP12AP54707 1039 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 RHOAP61586 193 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 DDX39BQ13838 428 aaKnown RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 R3HDM1Q15032 1099 aaKnown RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 GPAT2Q6NUI2 795 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 KRT74Q7RTS7 529 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 LRRC49Q8IUZ0 686 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 B3GALNT2Q8NCR0 500 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 SLC16A10Q8TF71 515 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 QRFPRQ96P65 431 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 MXRA8Q9BRK3 442 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 HDHD2Q9H0R4 259 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 METTL5Q9NRN9 209 aaKnown RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 MRPL39Q9NYK5 338 aaKnown RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 MYH8P13535 1937 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 TRIM49BA6NDI0 452 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 MANSC4A6NHS7 340 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 OR56A5P0C7T3 313 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 HNRNPH2P55795 449 aaKnown RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 DENND1BQ6P3S1 775 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 NFRKBQ6P4R8 1299 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 LRRC74BQ6ZQY2 392 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 PARP9Q8IXQ6 854 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 FAM151AQ8WW52 585 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 KCNN2Q9H2S1 579 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF70Q9UC06 446 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 H7C1W4 665 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 IGF2BP3O00425 579 aaKnown RBP eCLIP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 MGRN1O60291 552 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 STIP1P31948 543 aaKnown RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 GTF2H1P32780 548 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 DSG3P32926 999 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 TGFBR2P37173 567 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 PDX1P52945 283 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF618Q5T7W0 954 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 TMEM117Q9H0C3 514 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 GANQ9H2C0 597 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 COMMD8Q9NX08 183 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 TDRKHQ9Y2W6 561 aaKnown RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 ARIH1Q9Y4X5 557 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 SAMD9LQ8IVG5 1584 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 MAGEB16A2A368 324 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 TIPRLO75663 272 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 IL6P05231 212 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 RBP1P09455 135 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 IGFBP4P22692 258 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 PIK3R1P27986 724 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 ITGADQ13349 1161 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 TTC33Q6PID6 262 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 RFX8Q6ZV50 586 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 RIT2Q99578 217 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 HTATIP2Q9BUP3 242 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 VCPKMTQ9H867 229 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 FBXO2Q9UK22 296 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 VAV3Q9UKW4 847 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 PCDHGB3Q9Y5G1 929 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 ANKRD12Q6UB98 2062 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 AFDNP55196 1824 aaKnown RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 RAD51BO15315 384 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 STX11O75558 287 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 GCATO75600 419 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 KRT34O76011 436 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 TCF7P36402 384 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 SLC18A3Q16572 532 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 NFIL3Q16649 462 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 RERGQ96A58 199 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 PNMA5Q96PV4 448 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 DCLK3Q9C098 648 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 SOHLH2Q9NX45 425 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 MTMR4Q9NYA4 1195 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 MBD2Q9UBB5 411 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 TUBE1Q9UJT0 475 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 ADAM21Q9UKJ8 722 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 RUVBL2Q9Y230 463 aaKnown RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 ADGRA3Q8IWK6 1321 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 WEE2P0C1S8 567 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 CHRNA5P30532 468 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 EPHX2P34913 555 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 TFDP3Q5H9I0 405 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms