RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 GPM6BQ13491 265 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 SLC25A52Q3SY17 297 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 LRRC38Q5VT99 294 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 BSPRYQ5W0U4 402 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 PPP2R2DQ66LE6 453 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 SCYL2Q6P3W7 929 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 CCDC149Q6ZUS6 474 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 SND1Q7KZF4 910 aaKnown RBP eCLIP17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 CCDC50Q8IVM0 306 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 RNF139Q8WU17 664 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 KRT35Q92764 455 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 KHSRPQ92945 711 aaKnown RBP eCLIP17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 KLHL5Q96PQ7 755 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 NAP1L3Q99457 506 aaPredicted RBP17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 FAM204AQ9H8W3 233 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 ZWILCHQ9H900 591 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 L2HGDHQ9H9P8 463 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 ABCC13Q9NSE7 274 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 YBX2Q9Y2T7 364 aaKnown RBP17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 GREB1Q4ZG55 1949 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 SYNJ2BP-COX16A0A087WUM0 186 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 ZNF185O15231 689 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 SLU7O95391 586 aaKnown RBP17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 GLUD1P00367 558 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 MIPP30301 263 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 MARCKSL1P49006 195 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 TAS2R40P59535 323 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 ERVFC1P60507 584 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 PDE12Q6L8Q7 609 aaKnown RBP17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 TRNP1Q6NT89 227 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 HFE2Q6ZVN8 426 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 RSRC2Q7L4I2 434 aaKnown RBP17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 STRADAQ7RTN6 431 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 POLNQ7Z5Q5 900 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 MON1AQ86VX9 555 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 TCEAL8Q8IYN2 117 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 STKLD1Q8NE28 680 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 SLC7A14Q8TBB6 771 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 COG1Q8WTW3 980 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 EDEM1Q92611 657 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 RBM41Q96IZ5 413 aaKnown RBP17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 TBCBQ99426 244 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 NKX2-4Q9H2Z4 354 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 TLR8Q9NR97 1041 aaKnown RBP17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 COX16Q9P0S2 106 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 PCSK1NQ9UHG2 260 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 USP18Q9UMW8 372 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 IRAK3Q9Y616 596 aa17.89■□□□□ 0.45
CCDC28B-202ENST00000421922 M0QYT0 321 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 PGRMC1O00264 195 aaKnown RBP17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 RIOK3O14730 519 aaKnown RBP17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 SEC24AO95486 1093 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 LRG1P02750 347 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 RALAP11233 206 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 ATF6P18850 670 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 GBP1P32455 592 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 RDXP35241 583 aaKnown RBP17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 PSEN1P49768 467 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 DEUP1Q05D60 604 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 ITIH5Q86UX2 942 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 KATNAL2Q8IYT4 538 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 ELMOD1Q8N336 334 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 MRPL43Q8N983 215 aaKnown RBP17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 CARD6Q9BX69 1037 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 PBX4Q9BYU1 374 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 SLC28A3Q9HAS3 691 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 GMIPQ9P107 970 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 NAALADL1Q9UQQ1 740 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 INSL5Q9Y5Q6 135 aa17.88■□□□□ 0.45
CCDC28B-202ENST00000421922 A0A1W2PQH9 124 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 CTAGE15A4D2H0 777 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 C2orf71A6NGG8 1288 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 GRM6O15303 877 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 TGM5O43548 720 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 ARHGEF15O94989 841 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 ZRANB2O95218 330 aaKnown RBP eCLIP17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 CTAGE8P0CG41 777 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 PBX2P40425 430 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 TWF1Q12792 350 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 NME3Q13232 169 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 ZNF211Q13398 564 aaPredicted RBP17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 ELMSAN1Q6PJG2 1045 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 BEND5Q7L4P6 421 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 CTAGE6Q86UF2 777 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 CTAGE4Q8IX94 777 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 TDHQ8IZJ6 230 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 PDZD8Q8NEN9 1154 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 ALG3Q92685 438 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 DDIT4Q9NX09 232 aa17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 UXTQ9UBK9 157 aaPredicted RBP17.87■□□□□ 0.45
CCDC28B-202ENST00000421922 LRRD1A4D1F6 860 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 SPDYE4A6NLX3 237 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 H3BNC9 293 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 TRUB2O95900 331 aaKnown RBP17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 F9P00740 461 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 BMP8BP34820 402 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 PEX5P50542 639 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 USP46P62068 366 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 SLC25A11Q02978 314 aaKnown RBP17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 TAF10Q12962 218 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms