RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 LEFTY2O00292 366 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 ARNTLO00327 626 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 ZNF263O14978 683 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 PAPSS1O43252 624 aaPredicted RBP13.09□□□□□ -0.31
SKA1-203ENST00000417656 FBXO21O94952 628 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 TBX18O95935 607 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 IRF1P10914 325 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 RALAP11233 206 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 TCF3P15923 654 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 ACADSBP45954 432 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 CDR2Q01850 454 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 PTPN20Q4JDL3 420 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 ARHGAP29Q52LW3 1261 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 IER5LQ5T953 404 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 E4F1Q66K89 784 aaPredicted RBP13.09□□□□□ -0.31
SKA1-203ENST00000417656 RSRC2Q7L4I2 434 aaKnown RBP13.09□□□□□ -0.31
SKA1-203ENST00000417656 SCML4Q8N228 414 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 IPO4Q8TEX9 1081 aaKnown RBP13.09□□□□□ -0.31
SKA1-203ENST00000417656 IRGQQ8WZA9 623 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 DNASE1L2Q92874 299 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 NOX5Q96PH1 765 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 RBSNQ9H1K0 784 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 C11orf16Q9NQ32 467 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 ARHGEF3Q9NR81 526 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 CLIC5Q9NZA1 410 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 CFAP97Q9P2B7 532 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 RASAL2Q9UJF2 1139 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 WNT6Q9Y6F9 365 aa13.09□□□□□ -0.31
SKA1-203ENST00000417656 CHADO15335 359 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 CBFA2T2O43439 604 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 PDGFBP01127 241 aaPredicted RBP13.08□□□□□ -0.32
SKA1-203ENST00000417656 ERBB2P04626 1255 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 TPM3P06753 285 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 FERP16591 822 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 CHRNB2P17787 502 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 CDH5P33151 784 aaPredicted RBP13.08□□□□□ -0.32
SKA1-203ENST00000417656 ATP5C1P36542 298 aaKnown RBP13.08□□□□□ -0.32
SKA1-203ENST00000417656 NOMO3P69849 1222 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 PLCB2Q00722 1185 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 FMO1Q01740 532 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 PFKPQ01813 784 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 EFEMP1Q12805 493 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 ASIC2Q16515 512 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 FIGNQ5HY92 759 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 NAA35Q5VZE5 725 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 BSPRYQ5W0U4 402 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 BTBD8Q5XKL5 378 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 TRIM68Q6AZZ1 485 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 CC2D1AQ6P1N0 951 aaPredicted RBP13.08□□□□□ -0.32
SKA1-203ENST00000417656 TADA2BQ86TJ2 420 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 GAS2L3Q86XJ1 694 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 DDX42Q86XP3 938 aaKnown RBP eCLIP13.08□□□□□ -0.32
SKA1-203ENST00000417656 ZNF677Q86XU0 584 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 MIB1Q86YT6 1006 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 SIX5Q8N196 739 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 TMEM35BQ8NCS4 154 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 EDEM1Q92611 657 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 IRF7Q92985 503 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 WBP2Q969T9 261 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 PIWIL1Q96J94 861 aaKnown RBP13.08□□□□□ -0.32
SKA1-203ENST00000417656 PPP1R13BQ96KQ4 1090 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 THG1LQ9NWX6 298 aaKnown RBP13.08□□□□□ -0.32
SKA1-203ENST00000417656 DNMT3LQ9UJW3 386 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 MYO6Q9UM54 1294 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 ITIH6Q6UXX5 1313 aa13.08□□□□□ -0.32
SKA1-203ENST00000417656 KRBA1A5PL33 1030 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 LSM8O95777 96 aaKnown RBP13.07□□□□□ -0.32
SKA1-203ENST00000417656 LTFP02788 710 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 ARSAP15289 507 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 IFNAR2P48551 515 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 TNK2Q07912 1038 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 MLF2Q15773 248 aaPredicted RBP13.07□□□□□ -0.32
SKA1-203ENST00000417656 KLHDC10Q6PID8 442 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 FAM183BPQ6ZVS7 135 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 TMEM110Q86TL2 294 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 SCUBE3Q8IX30 993 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 TTC8Q8TAM2 541 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 GOLGA1Q92805 767 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 FAM149B1Q96BN6 582 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 CDK5RAP1Q96SZ6 601 aaKnown RBP13.07□□□□□ -0.32
SKA1-203ENST00000417656 NUP58Q9BVL2 599 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 KLF16Q9BXK1 252 aaPredicted RBP13.07□□□□□ -0.32
SKA1-203ENST00000417656 EBF3Q9H4W6 596 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 SYNCQ9H7C4 482 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 HPS4Q9NQG7 708 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 HEBP1Q9NRV9 189 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 GKN1Q9NS71 199 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 SEPT11Q9NVA2 429 aaKnown RBP13.07□□□□□ -0.32
SKA1-203ENST00000417656 WNT16Q9UBV4 365 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 TRIOO75962 3097 aa13.07□□□□□ -0.32
SKA1-203ENST00000417656 A0A1W2PQJ5 194 aa13.06□□□□□ -0.32
SKA1-203ENST00000417656 SART1O43290 800 aaKnown RBP13.06□□□□□ -0.32
SKA1-203ENST00000417656 AP5Z1O43299 807 aa13.06□□□□□ -0.32
SKA1-203ENST00000417656 CYP1A1P04798 512 aaPredicted RBP13.06□□□□□ -0.32
SKA1-203ENST00000417656 GYPCP04921 128 aa13.06□□□□□ -0.32
SKA1-203ENST00000417656 HMBSP08397 361 aa13.06□□□□□ -0.32
SKA1-203ENST00000417656 C2CD6Q53TS8 623 aa13.06□□□□□ -0.32
SKA1-203ENST00000417656 SFMBT2Q5VUG0 894 aa13.06□□□□□ -0.32
SKA1-203ENST00000417656 OR6B2Q6IFH4 312 aa13.06□□□□□ -0.32
SKA1-203ENST00000417656 OLFML1Q6UWY5 402 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms