RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 MAGEA4P43358 317 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 VPS41P49754 854 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 INCA1Q0VD86 236 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 IFT88Q13099 833 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 TMEM132DQ14C87 1099 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 RASA2Q15283 850 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 KYNUQ16719 465 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 QPCTQ16769 361 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 LONRF1Q17RB8 773 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 WDR72Q3MJ13 1102 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 LACTB2Q53H82 288 aaPredicted RBP15.47■□□□□ 0.07
USP4-203ENST00000415188 CYP4A22Q5TCH4 519 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 JADE1Q6IE81 842 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 BBS12Q6ZW61 710 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 XYLT1Q86Y38 959 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 TDRPQ86YL5 185 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 CEP120Q8N960 986 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 SLC4A11Q8NBS3 891 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 CCDC197Q8NCU1 140 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 CXorf38Q8TB03 319 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 MCRS1Q96EZ8 462 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 TMEM176AQ96HP8 235 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 ST3GAL5Q9UNP4 418 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.47■□□□□ 0.07
USP4-203ENST00000415188 C3orf70A6NLC5 250 aaPredicted RBP15.46■□□□□ 0.07
USP4-203ENST00000415188 ANKRD65E5RJM6 399 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 KRT10P13645 584 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 TCF4P15884 667 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 LIG3P49916 1009 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 ARSEP51690 589 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 OSTNP61366 133 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 RBP5P82980 135 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 CCDC142Q17RM4 750 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 ATP13A4Q4VNC1 1196 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 RNF187Q5TA31 235 aaPredicted RBP15.46■□□□□ 0.07
USP4-203ENST00000415188 KAZNQ674X7 775 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 PIGWQ7Z7B1 504 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 ZNF410Q86VK4 478 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 FAM228AQ86W67 206 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 CMTR2Q8IYT2 770 aaKnown RBP15.46■□□□□ 0.07
USP4-203ENST00000415188 ZNF668Q96K58 619 aaPredicted RBP15.46■□□□□ 0.07
USP4-203ENST00000415188 RBM15Q96T37 977 aaKnown RBP eCLIP15.46■□□□□ 0.07
USP4-203ENST00000415188 ADAM2Q99965 735 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 C11orf84Q9BUA3 381 aaPredicted RBP15.46■□□□□ 0.07
USP4-203ENST00000415188 SDCBP2Q9H190 292 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 KDM4CQ9H3R0 1056 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 NSUN3Q9H649 340 aaKnown RBP15.46■□□□□ 0.07
USP4-203ENST00000415188 SYNCQ9H7C4 482 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 UBN1Q9NPG3 1134 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 KLHL11Q9NVR0 708 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 SAMD15Q9P1V8 674 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 DERAQ9Y315 318 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 RWDD3Q9Y3V2 267 aa15.46■□□□□ 0.07
USP4-203ENST00000415188 A0A087WZ62 844 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 GOLGA8SH3BPF8 625 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 H3BQ06 376 aaPredicted RBP15.46■□□□□ 0.06
USP4-203ENST00000415188 LRCH4O75427 683 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 MICAL2O94851 1124 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 ITGB3P05106 788 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 RFC1P35251 1148 aaPredicted RBP15.46■□□□□ 0.06
USP4-203ENST00000415188 PCK1P35558 622 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 RAP1GAPP47736 663 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 CRYBB1P53674 252 aaPredicted RBP15.46■□□□□ 0.06
USP4-203ENST00000415188 ACTN3Q08043 901 aaPredicted RBP15.46■□□□□ 0.06
USP4-203ENST00000415188 DCAF4L1Q3SXM0 396 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 LEXMQ3ZCV2 418 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 RNASEH2BQ5TBB1 312 aaKnown RBP15.46■□□□□ 0.06
USP4-203ENST00000415188 EP400NLQ6ZTU2 488 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 NCAPGQ9BPX3 1015 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 FDXACB1Q9BRP7 624 aaPredicted RBP15.46■□□□□ 0.06
USP4-203ENST00000415188 ADPGKQ9BRR6 497 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 ELOVL4Q9GZR5 314 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 ALG13Q9NP73 1137 aaKnown RBP15.46■□□□□ 0.06
USP4-203ENST00000415188 ASNSD1Q9NWL6 643 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 EURLQ9NYK6 297 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 SENP1Q9P0U3 644 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 LRFN2Q9ULH4 789 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 BARX2Q9UMQ3 279 aaPredicted RBP15.46■□□□□ 0.06
USP4-203ENST00000415188 AKT3Q9Y243 479 aa15.46■□□□□ 0.06
USP4-203ENST00000415188 TMEM120BA0PK00 339 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 RNF8O76064 485 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 TSHRP16473 764 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 KDELR1P24390 212 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 SLC18A1P54219 525 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 CDC42EP1Q00587 391 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 GPS1Q13098 491 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 VSTM1Q6UX27 236 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 PPP1R21Q6ZMI0 780 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 CENPUQ71F23 418 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 CNPY4Q8N129 248 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 HPDLQ96IR7 371 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 ACAP3Q96P50 834 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 CPXM1Q96SM3 734 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 PLCD4Q9BRC7 762 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 SMYD3Q9H7B4 428 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 PLEKHA5Q9HAU0 1116 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 SAYSD1Q9NPB0 183 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 METTL5Q9NRN9 209 aaKnown RBP15.45■□□□□ 0.06
USP4-203ENST00000415188 FETUBQ9UGM5 382 aa15.45■□□□□ 0.06
USP4-203ENST00000415188 CYTH4Q9UIA0 394 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms