RNA–Protein interactions for RNA: ENST00000414981.2

HMGB3P23-201, Transcript of high mobility group box 3 pseudogene 23, humanhuman

BASIC

Gene HMGB3P23, Length 585 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P23-201ENST00000414981 CCDC184Q52MB2 194 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 RNASE12Q5GAN4 147 aaKnown RBP4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 KCTD20Q7Z5Y7 419 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 KRT78Q8N1N4 520 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 VGLL2Q8N8G2 317 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 ADAMTS18Q8TE60 1221 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 IPO4Q8TEX9 1081 aaKnown RBP4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 PHKBQ93100 1093 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 TTC17Q96AE7 1141 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 SLC39A13Q96H72 371 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 ZNF668Q96K58 619 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 SIN3AQ96ST3 1273 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 MACROD1Q9BQ69 325 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 C1QTNF7Q9BXJ2 289 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 PRKRIP1Q9H875 184 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 DDX21Q9NR30 783 aaKnown RBP eCLIP4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 GAR1Q9NY12 217 aaKnown RBP4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 FBXO9Q9UK97 447 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 HDAC9Q9UKV0 1011 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 ZNF804BA4D1E1 1349 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 ROCK2O75116 1388 aaKnown RBP4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 NAIPQ13075 1403 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 TCOF1Q13428 1488 aaKnown RBP4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 HECW1Q76N89 1606 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 CC2D2AQ9P2K1 1620 aa4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 POLR1AO95602 1720 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P23-201ENST00000414981 TCRBV5S1A1TA0A578 114 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 BTBD19C9JJ37 291 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 SMIM22K7EJ46 135 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 EPB41L2O43491 1005 aaKnown RBP4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 PDE8BO95263 885 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 VNN1O95497 513 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 PRR35P0CG20 571 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 IL1R1P14778 569 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 CD19P15391 556 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 TPH1P17752 444 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 ATF3P18847 181 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 KELP23276 732 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 LMO1P25800 156 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 ACVR2AP27037 513 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 GALEQ14376 348 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 EZH2Q15910 746 aaKnown RBP4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 WDR78Q5VTH9 848 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 CACHD1Q5VU97 1274 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 DENND2CQ68D51 928 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 PLAG1Q6DJT9 500 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 MZT2AQ6P582 158 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 KIRREL2Q6UWL6 708 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 ZNF66Q6ZN08 573 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 PTCHD4Q6ZW05 846 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 C1QL2Q7Z5L3 287 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 NEK8Q86SG6 692 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 DGKHQ86XP1 1220 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 CCAR1Q8IX12 1150 aaKnown RBP4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 PNLDC1Q8NA58 520 aaKnown RBP4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 C8orf58Q8NAV2 365 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 CCDC17Q96LX7 622 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 FYTTD1Q96QD9 318 aaKnown RBP4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 SLC29A3Q9BZD2 475 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 UNKQ9C0B0 810 aaKnown RBP4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 CIPCQ9C0C6 399 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 MGAT4CQ9UBM8 478 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 NKX1-2Q9UD57 310 aaPredicted RBP4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 NUDCQ9Y266 331 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 ROCK1Q13464 1354 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 CCDC7Q96M83 1385 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 MYOM3Q5VTT5 1437 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 CUL7Q14999 1698 aa4.34□□□□□ -1.71
HMGB3P23-201ENST00000414981 PCF11O94913 1555 aaKnown RBP4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 ARHGEF11O15085 1522 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 SPATA31E1Q6ZUB1 1445 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 UBE2Q2LH0YL09 131 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 RAB27BO00194 218 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 CES2O00748 559 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 ZNF500O60304 480 aaPredicted RBP4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 PIAS2O75928 621 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 MT-CO3P00414 261 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 MT-ND5P03915 603 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 CYP2D6P10635 497 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 IL1R2P27930 398 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 PGDP52209 483 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 PSG6Q00889 435 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 MAP9Q49MG5 647 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 MTX3Q5HYI7 312 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 CEP78Q5JTW2 689 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 UNC13DQ70J99 1090 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 BCDIN3DQ7Z5W3 292 aaKnown RBP4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 WDR75Q8IWA0 830 aaKnown RBP4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 GALNT16Q8N428 558 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 SMG7Q92540 1137 aaKnown RBP4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 ZDHHC12Q96GR4 267 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 RITA1Q96K30 269 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 ZBTB45Q96K62 511 aaPredicted RBP4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 SNX22Q96L94 193 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 BRIP1Q9BX63 1249 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 ZCWPW1Q9H0M4 648 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 MAP3K20Q9NYL2 800 aaKnown RBP4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 MID2Q9UJV3 735 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 ITGB1BP2Q9UKP3 347 aa4.33□□□□□ -1.72
HMGB3P23-201ENST00000414981 BTBD3Q9Y2F9 522 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms