RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CCDC60Q8IWA6 550 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 UNC45BQ8IWX7 931 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 PDCD7Q8N8D1 485 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 DNERQ8NFT8 737 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 OR5B17Q8NGF7 314 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 FGD4Q96M96 766 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 FAM111AQ96PZ2 611 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 PANX3Q96QZ0 392 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 NFKBIZQ9BYH8 718 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 VCX3AQ9NNX9 186 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 ASNSD1Q9NWL6 643 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 SEPT9Q9UHD8 586 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 DCTN4Q9UJW0 460 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 TRPC5Q9UL62 973 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 COL4A4P53420 1690 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 GRXCR2A6NFK2 248 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 B2RBV5 119 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 MSCO60682 206 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 MAFO75444 373 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 GCATO75600 419 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 RBP3P10745 1247 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 BGNP21810 368 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 GRK2P25098 689 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 ADSLP30566 484 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 RFC1P35251 1148 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 ADCY1Q08828 1119 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 FAAP100Q0VG06 881 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 BST1Q10588 318 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 STILQ15468 1287 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 PTPN20Q4JDL3 420 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 FAXCQ5TGI0 409 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 METTL21CQ5VZV1 264 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 TREML1Q86YW5 311 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 CRLF3Q8IUI8 442 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 KBTBD2Q8IY47 623 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 SEPT12Q8IYM1 358 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 NME8Q8N427 588 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 RBM15BQ8NDT2 890 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 GSDMBQ8TAX9 411 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 DEPTORQ8TB45 409 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 ACTRT2Q8TDY3 377 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 SLC7A3Q8WY07 619 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 TTC17Q96AE7 1141 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 FAM118BQ9BPY3 351 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 CENPKQ9BS16 269 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 CNPY3Q9BT09 278 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 MRPL4Q9BYD3 311 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF341Q9BYN7 854 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 PPP1R12CQ9BZL4 782 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 C2orf40Q9H1Z8 148 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 PLAC1Q9HBJ0 212 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 XAB2Q9HCS7 855 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 S100A14Q9HCY8 104 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 PTPRHQ9HD43 1115 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 EIF2B3Q9NR50 452 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 FBXO6Q9NRD1 293 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 NDE1Q9NXR1 346 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 MOCS1Q9NZB8 636 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 SLC7A8Q9UHI5 535 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 A0A088AWK7 358 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 IGKV6-21A0A0C4DH24 114 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 TCRBV7S3A2A0A539 114 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 TTLL13PA6NNM8 815 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 TCP10L2B9ZVM9 353 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 MDM4O15151 490 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 RNF8O76064 485 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 CALCAP01258 141 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 HOXC6P09630 235 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 DNAJB1P25685 340 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 MAGEA12P43365 314 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 NR2C2P49116 596 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 ACOT2P49753 483 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 RPS6KA3P51812 740 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 POU5F1BQ06416 359 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 ASPHQ12797 758 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 THOC5Q13769 683 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 LLGL1Q15334 1064 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 BOLA3Q53S33 107 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 THEMIS2Q5TEJ8 643 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 SWSAP1Q6NVH7 229 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 RIPOR1Q6ZS17 1223 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 TSHZ1Q6ZSZ6 1077 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 CAND1Q86VP6 1230 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 IGDCC3Q8IVU1 814 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 MAP7D3Q8IWC1 876 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 HACE1Q8IYU2 909 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 KIAA0319LQ8IZA0 1049 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 RTKN2Q8IZC4 609 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 CCDC33Q8N5R6 958 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 DRAXINQ8NBI3 349 aaPredicted RBP5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 UCMAQ8WVF2 138 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 LZICQ8WZA0 190 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 TFAP2BQ92481 460 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 HAUS1Q96CS2 278 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 FAM167AQ96KS9 214 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 RNF157Q96PX1 679 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 GORASP1Q9BQQ3 440 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF670Q9BS34 389 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 NAT9Q9BTE0 207 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 SPATA16Q9BXB7 569 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms