RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SPATA7Q9P0W8 599 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 STRIP2Q9ULQ0 834 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 TELO2Q9Y4R8 837 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 GON4LQ3T8J9 2241 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 SLC25A3Q00325 362 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 NME3Q13232 169 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 TRIM16LQ309B1 348 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 SPDYCQ5MJ68 293 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 FNBP1LQ5T0N5 605 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 MAP3K21Q5TCX8 1036 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 FAM160B1Q5W0V3 765 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 RNF43Q68DV7 783 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 GET4Q7L5D6 327 aaPredicted RBP12.37□□□□□ -0.43
HMGB1-206ENST00000405805 CLNKQ7Z7G1 428 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 RNF135Q8IUD6 432 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 IL1RAPL1Q9NZN1 696 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 MTO1Q9Y2Z2 717 aaKnown RBP12.37□□□□□ -0.43
HMGB1-206ENST00000405805 SNX9Q9Y5X1 595 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 PLIN4Q96Q06 1357 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 ZNF862O60290 1169 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 SERPINB8P50452 374 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 HEATR6Q6AI08 1181 aaKnown RBP12.36□□□□□ -0.43
HMGB1-206ENST00000405805 PHC3Q8NDX5 983 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 DDHD1Q8NEL9 900 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 DNAJC1Q96KC8 554 aaKnown RBP12.36□□□□□ -0.43
HMGB1-206ENST00000405805 PLEKHG4BQ96PX9 1271 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 NMUR2Q9GZQ4 415 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 MYBPC2Q14324 1141 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 CCDC14Q49A88 953 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 GLRA4Q5JXX5 417 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 LRRC74BQ6ZQY2 392 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 ASAP3Q8TDY4 903 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 LPAR1Q92633 364 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 MBOAT7Q96N66 472 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 MED10Q9BTT4 135 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 MRIQ9BWK5 157 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 MAF1Q9H063 256 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 NMRK1Q9NWW6 199 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 MOSPD1Q9UJG1 213 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 FNDC3AQ9Y2H6 1198 aaKnown RBP12.36□□□□□ -0.43
HMGB1-206ENST00000405805 STARD13Q9Y3M8 1113 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 TSPAN9O75954 239 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 CXCL8P10145 99 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 MCF2P10911 925 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 ENO3P13929 434 aaPredicted RBP12.36□□□□□ -0.43
HMGB1-206ENST00000405805 MIPP30301 263 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 PHKA2P46019 1235 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 PRAMEP78395 509 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 ZNF677Q86XU0 584 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 SCUBE1Q8IWY4 988 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 SGF29Q96ES7 293 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 PCDH9Q9HC56 1237 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 ARHGEF3Q9NR81 526 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 USP18Q9UMW8 372 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 DNAJC16Q9Y2G8 782 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 WASF2Q9Y6W5 498 aa12.36□□□□□ -0.43
HMGB1-206ENST00000405805 E9PBE3 544 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 KLHL41O60662 606 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 F7P08709 466 aaPredicted RBP12.35□□□□□ -0.43
HMGB1-206ENST00000405805 ARL4AP40617 200 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 PID1Q7Z2X4 250 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 KATNAL2Q8IYT4 538 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 AGBL3Q8NEM8 1001 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 ZNF516Q92618 1163 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 FIZ1Q96SL8 496 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 APOBEC3GQ9HC16 384 aaKnown RBP12.35□□□□□ -0.43
HMGB1-206ENST00000405805 GGA3Q9NZ52 723 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 KLHL8Q9P2G9 620 aaPredicted RBP12.35□□□□□ -0.43
HMGB1-206ENST00000405805 ITM2BQ9Y287 266 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 TCRBV7S3A2A0A539 114 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 TRIM64CA6NLI5 447 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 GOLGA8TH3BQL2 631 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 CAPN15O75808 1086 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 UBAP2LQ14157 1087 aaKnown RBP12.35□□□□□ -0.43
HMGB1-206ENST00000405805 ZACNQ401N2 412 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 PATL1Q86TB9 770 aaKnown RBP12.35□□□□□ -0.43
HMGB1-206ENST00000405805 RXFP2Q8WXD0 754 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 EXT2Q93063 718 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 OXNAD1Q96HP4 312 aaPredicted RBP12.35□□□□□ -0.43
HMGB1-206ENST00000405805 CYLDQ9NQC7 956 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 AVENQ9NQS1 362 aaPredicted RBP12.35□□□□□ -0.43
HMGB1-206ENST00000405805 TIAM2Q8IVF5 1701 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 USP12O75317 370 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 GARTP22102 1010 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 SP100P23497 879 aaPredicted RBP12.35□□□□□ -0.43
HMGB1-206ENST00000405805 ARPC4P59998 168 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 BST1Q10588 318 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 MTA1Q13330 715 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 PEX6Q13608 980 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 CNGA3Q16281 694 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 IRGCQ6NXR0 463 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 DENND5BQ6ZUT9 1274 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 MAN1C1Q9NR34 630 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 RPS6KL1Q9Y6S9 549 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 ADGRA3Q8IWK6 1321 aa12.35□□□□□ -0.43
HMGB1-206ENST00000405805 LRP5O75197 1615 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 RBL1P28749 1068 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 MGAT5Q09328 741 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 RALGDSQ12967 914 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 ART3Q13508 389 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms