RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 PHGDHO43175 533 aaKnown RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 FAM155BO75949 473 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ALBP02768 609 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 SLC12A3P55017 1021 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 CDH15P55291 814 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ADAM17P78536 824 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 TRIM25Q14258 630 aaKnown RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 CLEC16AQ2KHT3 1053 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 MYLK3Q32MK0 819 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 IL31Q6EBC2 164 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 TMEM214Q6NUQ4 689 aaKnown RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 CCDC81Q6ZN84 652 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ERI1Q8IV48 349 aaKnown RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ADPGKQ9BRR6 497 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 CLK4Q9HAZ1 481 aaKnown RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 TRIM39Q9HCM9 518 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 TRAFD1O14545 582 aaPredicted RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 PORP16435 677 aaPredicted RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 CRKLP46109 303 aaKnown RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 INHBCP55103 352 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 PSMC5P62195 406 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 NME3Q13232 169 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 POTEHQ6S545 545 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 SETD3Q86TU7 594 aaPredicted RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 NLRX1Q86UT6 975 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 CIB1Q99828 191 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 C1orf50Q9BV19 199 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 DGCR6LQ9BY27 220 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 TASP1Q9H6P5 420 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 SCHIP1Q9P0W5 487 aaPredicted RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 ARIH1Q9Y4X5 557 aaPredicted RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 CHD2O14647 1828 aaKnown RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 LIASO43766 372 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 ZNF23P17027 643 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 ACOT2P49753 483 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 RAD23AP54725 363 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 IFRD2Q12894 506 aaPredicted RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 EML3Q32P44 896 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 OTUD3Q5T2D3 398 aaPredicted RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 VWA5B1Q5TIE3 1220 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 MICU2Q8IYU8 434 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 RYBPQ8N488 228 aaPredicted RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 VGLL2Q8N8G2 317 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 DACT3Q96B18 629 aaPredicted RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 MARK4Q96L34 752 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 KIFC3Q9BVG8 833 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 GIN1Q9NXP7 522 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 RAB26Q9ULW5 256 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 TMED5Q9Y3A6 229 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 FADS3Q9Y5Q0 445 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 ANKRD26Q9UPS8 1709 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 C16orf96A6NNT2 1141 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 GLRA3O75311 464 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 MT-CO1P00395 513 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 CAPN1P07384 714 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 CDK4P11802 303 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 CPA3P15088 417 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 MUTP22033 750 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 KLRK1P26718 216 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 IREB2P48200 963 aaKnown RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 JAM2P57087 298 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 PIGHQ14442 188 aaPredicted RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 GJC2Q5T442 439 aaPredicted RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 GALNT18Q6P9A2 607 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 TMC7Q7Z402 723 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 ZBTB33Q86T24 672 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 TAMM41Q96BW9 452 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 SGF29Q96ES7 293 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 WDR41Q9HAD4 459 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 PNPLA3Q9NST1 481 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 PNPOQ9NVS9 261 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 PIH1D1Q9NWS0 290 aaKnown RBP9.61□□□□□ -0.87
COL28A1-201ENST00000399429 SORCS3Q9UPU3 1222 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 PRELID1Q9Y255 219 aa9.61□□□□□ -0.87
COL28A1-201ENST00000399429 HTR3EA5X5Y0 456 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 ARHGEF9O43307 516 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 AVILO75366 819 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 TGDSO95455 350 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 SERPINE1P05121 402 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 SPATA31D3P0C874 917 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 NR4A1P22736 598 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 SNX16P57768 344 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 TAS2R40P59535 323 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 FMO1Q01740 532 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 TTLL12Q14166 644 aaPredicted RBP9.6□□□□□ -0.87
COL28A1-201ENST00000399429 ARSHQ5FYA8 562 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 HEATR6Q6AI08 1181 aaKnown RBP9.6□□□□□ -0.87
COL28A1-201ENST00000399429 OGFOD2Q6N063 350 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 SPATA31D4Q6ZUB0 917 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 TNIP2Q8NFZ5 429 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 AGAP3Q96P47 875 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 TMEM8AQ9HCN3 771 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 HMG20AQ9NP66 347 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 AFG3L2Q9Y4W6 797 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 TCRBV9S1A1TA0A576 114 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 MSH4O15457 936 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 UGT1A9O60656 530 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 SIN3BO75182 1162 aa9.6□□□□□ -0.87
COL28A1-201ENST00000399429 UGT1A6P19224 532 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms