RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 STRA8Q7Z7C7 330 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 MREGQ8N565 214 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 PCYOX1LQ8NBM8 494 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 RBM46Q8TBY0 533 aaKnown RBP11.11□□□□□ -0.63
CCDC40-204ENST00000397545 TRAPPC12Q8WVT3 735 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 CKAP2Q8WWK9 683 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 ASIC4Q96FT7 647 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 PURBQ96QR8 312 aaKnown RBP11.11□□□□□ -0.63
CCDC40-204ENST00000397545 DPP3Q9NY33 737 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 PDP2Q9P2J9 529 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-204ENST00000397545 ZNF229Q9UJW7 825 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 ZNF831Q5JPB2 1677 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 IQCA1LA6NCM1 817 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 ASB14A6NK59 587 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 USP12O75317 370 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 KRT16P08779 473 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 CPA3P15088 417 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 PPARGP37231 505 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-204ENST00000397545 EML3Q32P44 896 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 CD302Q8IX05 232 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 DIS3LQ8TF46 1054 aaKnown RBP11.11□□□□□ -0.63
CCDC40-204ENST00000397545 CPB2Q96IY4 423 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 LATS2Q9NRM7 1088 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 IARS2Q9NSE4 1012 aaKnown RBP11.11□□□□□ -0.63
CCDC40-204ENST00000397545 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.11□□□□□ -0.63
CCDC40-204ENST00000397545 ERAP1Q9NZ08 941 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 SCHIP1Q9P0W5 487 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-204ENST00000397545 APPL1Q9UKG1 709 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 C19orf81C9J6K1 198 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 HBP1O60381 514 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 ADRB2P07550 413 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 CYP2C9P11712 490 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 NFKBIAP25963 317 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 HMOX2P30519 316 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 C1QBPQ07021 282 aaKnown RBP11.11□□□□□ -0.63
CCDC40-204ENST00000397545 MYBPC2Q14324 1141 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 KBTBD12Q3ZCT8 623 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 FUT11Q495W5 492 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 ACCSLQ4AC99 568 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 N4BP2L1Q5TBK1 243 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-204ENST00000397545 HGSNATQ68CP4 663 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 TATDN1Q6P1N9 297 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 KIAA1683Q9H0B3 1180 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 TAGLN3Q9UI15 199 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 HACL1Q9UJ83 578 aa11.11□□□□□ -0.63
CCDC40-204ENST00000397545 RUVBL2Q9Y230 463 aaKnown RBP11.11□□□□□ -0.63
CCDC40-204ENST00000397545 AGPSO00116 658 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 NDUFS3O75489 264 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 SMNDC1O75940 238 aaKnown RBP eCLIP11.1□□□□□ -0.63
CCDC40-204ENST00000397545 SRP72O76094 671 aaKnown RBP11.1□□□□□ -0.63
CCDC40-204ENST00000397545 FRMPD4Q14CM0 1322 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 ASAP3Q8TDY4 903 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 STK32AQ8WU08 396 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 SEMA4DQ92854 862 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 TBC1D10AQ9BXI6 508 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 NEUROG2Q9H2A3 272 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 RRAGCQ9HB90 399 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 PTPRHQ9HD43 1115 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 KIF17Q9P2E2 1029 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 TJP2Q9UDY2 1190 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 TGFB1I1O43294 461 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 STAG3L1P0CL83 205 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 VCAM1P19320 739 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 CYLC2Q14093 348 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-204ENST00000397545 EFHC1Q5JVL4 640 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 BTBD10Q9BSF8 475 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 FRMD8Q9BZ67 464 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-204ENST00000397545 PXMP2Q9NR77 195 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 AP4E1Q9UPM8 1137 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 NR2E1Q9Y466 385 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 LY75O60449 1722 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 MAGEB2O15479 319 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 DCXO43602 365 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 CELF2O95319 508 aaKnown RBP11.1□□□□□ -0.63
CCDC40-204ENST00000397545 PCYT1AP49585 367 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 ZNF157P51786 506 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-204ENST00000397545 GCNT1Q02742 428 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 DGKZQ13574 1117 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 TTC33Q6PID6 262 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-204ENST00000397545 PALB2Q86YC2 1186 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 SCUBE3Q8IX30 993 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 RDM1Q8NG50 284 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 TUBGCP3Q96CW5 907 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 HES6Q96HZ4 224 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 PIF1Q9H611 641 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 UBR3Q6ZT12 1888 aa11.1□□□□□ -0.63
CCDC40-204ENST00000397545 A0A087WZ62 844 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 SUPT3HB4E1H0 165 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 ESRRBO95718 433 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 C6orf222P0C671 652 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 VDRP11473 427 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 MIPP30301 263 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 CSE1LP55060 971 aaKnown RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 RPL7AP62424 266 aaKnown RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 SLC34A1Q06495 639 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 NBPF12Q5TAG4 269 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 BHMTQ93088 406 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 FDXACB1Q9BRP7 624 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 ASPSCR1Q9BZE9 553 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms