RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 ADIGQ0VDE8 80 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 OLFML1Q6UWY5 402 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 CACNA2D3Q8IZS8 1091 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 TMEM169Q96HH4 297 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 HES6Q96HZ4 224 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 HSFY1Q96LI6 401 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 PGLYRP2Q96PD5 576 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 LBHD1Q9BQE6 289 aaPredicted RBP12.99□□□□□ -0.33
CIITA-202ENST00000381835 TRIM31Q9BZY9 425 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 CD248Q9HCU0 757 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 SLC40A1Q9NP59 571 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 ABI2Q9NYB9 513 aaPredicted RBP12.99□□□□□ -0.33
CIITA-202ENST00000381835 RANBP2P49792 3224 aaKnown RBP12.99□□□□□ -0.33
CIITA-202ENST00000381835 C2CD2LO14523 706 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 CHUKO15111 745 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 RASSF9O75901 435 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 FGGP02679 453 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 SSR1P43307 286 aaKnown RBP12.99□□□□□ -0.33
CIITA-202ENST00000381835 ACADSBP45954 432 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 PSEN1P49768 467 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 ZNF252P-AS1Q0IIN9 211 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 MRPL58Q14197 206 aaKnown RBP12.99□□□□□ -0.33
CIITA-202ENST00000381835 TAF5Q15542 800 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 COL13A1Q5TAT6 717 aaPredicted RBP12.99□□□□□ -0.33
CIITA-202ENST00000381835 PRSS55Q6UWB4 352 aaPredicted RBP12.99□□□□□ -0.33
CIITA-202ENST00000381835 C4orf50Q6ZRC1 276 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 CPLX4Q7Z7G2 160 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 DCP1BQ8IZD4 617 aaKnown RBP12.99□□□□□ -0.33
CIITA-202ENST00000381835 ZMIZ2Q8NF64 920 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 KRT35Q92764 455 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 VN1R3Q9BXE9 311 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 ZCWPW1Q9H0M4 648 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 LRRC4Q9HBW1 653 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 IP6K2Q9UHH9 426 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 ATP8A1Q9Y2Q0 1164 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 KIAA1671Q9BY89 1806 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 CCDC85CA6NKD9 419 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 LAG3P18627 525 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 CYP2F1P24903 491 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 MARCKSL1P49006 195 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 NDUFV1P49821 464 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 SLC6A3Q01959 620 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 USP41Q3LFD5 358 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 GKAP1Q5VSY0 366 aaPredicted RBP12.98□□□□□ -0.33
CIITA-202ENST00000381835 KIAA1841Q6NSI8 718 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 ANKS3Q6ZW76 656 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 SLC39A11Q8N1S5 342 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 COLGALT1Q8NBJ5 622 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.98□□□□□ -0.33
CIITA-202ENST00000381835 SEC14L1Q92503 715 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 NDRG1Q92597 394 aaKnown RBP12.98□□□□□ -0.33
CIITA-202ENST00000381835 ABHD8Q96I13 439 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 FMO2Q99518 471 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 RAB17Q9H0T7 212 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 SLC4A7Q9Y6M7 1214 aa12.98□□□□□ -0.33
CIITA-202ENST00000381835 OR6C75A6NL08 312 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 F8VP50 259 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 CPB1P15086 417 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 PSMA2P25787 234 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 RPL34P49207 117 aaKnown RBP12.97□□□□□ -0.33
CIITA-202ENST00000381835 TKTL1P51854 596 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 EIF3BP55884 814 aaKnown RBP12.97□□□□□ -0.33
CIITA-202ENST00000381835 GPRIN1Q7Z2K8 1008 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 SIX6OS1Q8N1H7 587 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 UBL4BQ8N7F7 174 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 TRIM51Q9BSJ1 452 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 CYLDQ9NQC7 956 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 C5orf60A6NFR6 353 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 MIF4GDA9UHW6 222 aaKnown RBP12.97□□□□□ -0.33
CIITA-202ENST00000381835 H7C4K7 107 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 DDX3YO15523 660 aaKnown RBP12.97□□□□□ -0.33
CIITA-202ENST00000381835 GRIK1P39086 918 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 SLC1A1P43005 524 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 NFE2Q16621 373 aaPredicted RBP12.97□□□□□ -0.33
CIITA-202ENST00000381835 ANKRD20A8PQ5CZ79 823 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 RSPO2Q6UXX9 243 aaPredicted RBP12.97□□□□□ -0.33
CIITA-202ENST00000381835 ZDHHC17Q8IUH5 632 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 SCN4BQ8IWT1 228 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 FIBCD1Q8N539 461 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 KCTD13Q8WZ19 329 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 HERVK_113Q902F9 699 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 ALG3Q92685 438 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 CD101Q93033 1021 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 CNOT10Q9H9A5 744 aaKnown RBP12.97□□□□□ -0.33
CIITA-202ENST00000381835 CSNK1G1Q9HCP0 422 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 DMAP1Q9NPF5 467 aaPredicted RBP12.97□□□□□ -0.33
CIITA-202ENST00000381835 SPG21Q9NZD8 308 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 INSL6Q9Y581 213 aa12.97□□□□□ -0.33
CIITA-202ENST00000381835 EFEMP2O95967 443 aa12.96□□□□□ -0.33
CIITA-202ENST00000381835 PDGFRAP16234 1089 aa12.96□□□□□ -0.33
CIITA-202ENST00000381835 ATP2A2P16615 1042 aaKnown RBP12.96□□□□□ -0.33
CIITA-202ENST00000381835 RPL17P18621 184 aaKnown RBP12.96□□□□□ -0.33
CIITA-202ENST00000381835 GJC1P36383 396 aa12.96□□□□□ -0.33
CIITA-202ENST00000381835 HTRA4P83105 476 aaPredicted RBP12.96□□□□□ -0.33
CIITA-202ENST00000381835 PIGHQ14442 188 aaPredicted RBP12.96□□□□□ -0.33
CIITA-202ENST00000381835 ADAT2Q7Z6V5 191 aaKnown RBP12.96□□□□□ -0.33
CIITA-202ENST00000381835 HERC6Q8IVU3 1022 aa12.96□□□□□ -0.33
CIITA-202ENST00000381835 ATAD1Q8NBU5 361 aa12.96□□□□□ -0.33
CIITA-202ENST00000381835 RXFP2Q8WXD0 754 aa12.96□□□□□ -0.33
CIITA-202ENST00000381835 KHSRPQ92945 711 aaKnown RBP eCLIP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms